View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_37 (Length: 367)
Name: NF9461_low_37
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 5 - 361
Target Start/End: Original strand, 762820 - 763175
Alignment:
| Q |
5 |
ccattttggataaatcatttttgttcatattttacttgtatgtagaccaagctctagattatcatgtaccccttcccctaagaacccgatgattgacgaa |
104 |
Q |
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| T |
762820 |
ccattttggataaatcatttttgttcatattttacttgtatgtagaccaagctctagtttatcatgtaccccttcccctgagaacccgatgattaacgaa |
762919 |
T |
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| Q |
105 |
aaataatattcatcgtgtttaataattgtctcaacatgctcctaaaacaaacttgctaatgaaattaaaatagacnnnnnnnacggtcacaaaaataact |
204 |
Q |
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| T |
762920 |
aaataatattcatcgtgtttaataattgtctcaacatgctcctaaaacaaacttgctaatgaaattaaaatagactttttttacag-cacaaaaataact |
763018 |
T |
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| Q |
205 |
catttcatctatcaaagtggtcaaaatacatgataaaatataatcaaacacttagcaactagcatatgacaatgtccctcgagctggtaagttagcaaca |
304 |
Q |
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| T |
763019 |
catttcatttatcaaagtggtcaaaatacatgacaaaatataatcaaacacttagcaactagcatatgacaatgtccctcgagctagtaagttagcaaca |
763118 |
T |
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| Q |
305 |
ttgttggttgtctcatgataaaatgtaccctaaagcttgtttcaaaacctatgcttc |
361 |
Q |
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| T |
763119 |
ttgttggttgtctcatgataaaatgtaccctaaagcttgtttcaaaacccatgcttc |
763175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 336
Target Start/End: Complemental strand, 26408208 - 26408060
Alignment:
| Q |
189 |
ggtcacaaaaataactcatttcatctatcaaagtggtcaaaatacatgataaaatataatcaaacacttagcaactagcatatgacaatgtccctcgagc |
288 |
Q |
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| T |
26408208 |
ggtcacaaaattaactcaatttatttatcaaagtaatcataatataggatgaaatataatcaaacacttaacgactaacatatgacaatgccgctcaaac |
26408109 |
T |
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| Q |
289 |
tggtaagttagcaacattgttgg-ttgtctcatgataaaatgtacccta |
336 |
Q |
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| T |
26408108 |
tagtaaatgagctacatttttggtttgtctcataataaaacgtatccta |
26408060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 52011029 - 52010947
Alignment:
| Q |
229 |
aatacatgataaaatataatcaaacacttagcaactagcatatgacaatgtccctcgagctggtaagttagcaacattgttgg |
311 |
Q |
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| T |
52011029 |
aatacaggataaaatataatcaaatacttaacgactaggatatgataatgccgctcgagctagtaagtgagctacgttgttgg |
52010947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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