View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_38 (Length: 366)
Name: NF9461_low_38
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 183 - 351
Target Start/End: Original strand, 24401185 - 24401353
Alignment:
| Q |
183 |
gcataatttgcaggtggataagattgaggacagtattgagttcataagctctaggcctaagcctcttgccctctatgttttcaccaaaaacaaaacactg |
282 |
Q |
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| T |
24401185 |
gcataatttgcaggtggataagattgaggacagtattgaattcataagctctaggcctaagcctcttgccctttatgttttcaccaaaaacaaaacactg |
24401284 |
T |
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| Q |
283 |
cagaacagaatgatatctgaaacatcatcaggcagtgttactttcaatgatgcaattctgcaagtatta |
351 |
Q |
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| T |
24401285 |
cagaacagaatgatatctgaaacatcatcaggcagtgttactttcaatgatgcaattctgcaagtatta |
24401353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 24401021 - 24401124
Alignment:
| Q |
19 |
accacgtgatttttaaatgacgacactagttactattttacaaatgtctggtacgaatcttgacgttacaaaatcaaactcttacgacttagttttgcca |
118 |
Q |
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| T |
24401021 |
accacatgatttttaaatgacgacactagtgactattttacaaatgtctggtacgaatcttgacgttacaaaatcaaactcttacgacttagttttacca |
24401120 |
T |
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| Q |
119 |
catg |
122 |
Q |
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| T |
24401121 |
catg |
24401124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 311
Target Start/End: Original strand, 41845585 - 41845708
Alignment:
| Q |
188 |
atttgcaggtggataagattgaggacagtattgagttcataagctctaggcctaagcctcttgccctctatgttttcaccaaaaacaaaacactgcagaa |
287 |
Q |
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| T |
41845585 |
atttgcaggtggagaagattgaagacggtattgagttcataaactcaaagcctaaacctctagcaatttatgccttcacaaagaacaatacactgcagag |
41845684 |
T |
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| Q |
288 |
cagaatgatatctgaaacatcatc |
311 |
Q |
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| T |
41845685 |
aagattggtatctgaaacatcatc |
41845708 |
T |
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