View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_4 (Length: 680)

Name: NF9461_low_4
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_4
NF9461_low_4
[»] chr8 (11 HSPs)
chr8 (18-668)||(950102-950751)
chr8 (252-664)||(1101249-1101651)
chr8 (18-122)||(1101079-1101183)
chr8 (568-664)||(14939634-14939730)
chr8 (568-659)||(31032024-31032115)
chr8 (45-91)||(942550-942596)
chr8 (578-664)||(19473661-19473747)
chr8 (578-664)||(19544586-19544672)
chr8 (578-664)||(19588024-19588110)
chr8 (562-620)||(29456064-29456122)
chr8 (568-664)||(3379130-3379226)
[»] scaffold0057 (1 HSPs)
scaffold0057 (568-664)||(58905-59001)
[»] chr1 (2 HSPs)
chr1 (568-664)||(5924801-5924897)
chr1 (568-659)||(9487460-9487549)
[»] chr4 (1 HSPs)
chr4 (568-664)||(52545118-52545214)
[»] chr5 (1 HSPs)
chr5 (580-659)||(20012943-20013022)
[»] chr6 (1 HSPs)
chr6 (586-664)||(24544757-24544835)
[»] chr2 (3 HSPs)
chr2 (579-665)||(17148642-17148728)
chr2 (139-171)||(30826135-30826167)
chr2 (136-168)||(31525803-31525835)


Alignment Details
Target: chr8 (Bit Score: 554; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 18 - 668
Target Start/End: Complemental strand, 950751 - 950102
Alignment:
Q  18 ggatggttggtagttaaattgatgagagttcctcatcatcttcaaggccttgtgttggggtgttgtgctgcaggtagaaaaattcacttacattttttaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  950751 ggatggttggtagttaaattgatgagagttcctcatcatcttcaaggccttgtgttggggtgttgtgctgcaggtagaaaaattcacttacattttttaa 950652  T
Q  118 attattttcttccctattctgcatatgcgggagctttagtgtaccagattgtccannnnnnnnatctccttacgcatctaattatcacatattttaataa 217  Q
    ||||| |||||||| | ||||||||||| |||||||||||| ||| | |||||||        |||||||||| ||||||||||||||||||||||| ||    
T  950651 attatcttcttcccgactctgcatatgcaggagctttagtgcaccgggttgtccattttttt-atctccttacacatctaattatcacatattttaaaaa 950553  T
Q  218 aaaagttaacgttaaagatgaatttgatttgatgtctacaggaaatctaggaaatttgcccttgattattgtcccagctgtatgtaaacaaacaggcaac 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  950552 aaaagttaatgttaaagatgaatttgatttgatgtctacaggaaatctaggaaatttgcccttgattattgtcccagctgtatgtaaacaaacaggcaac 950453  T
Q  318 ccttttggagatgcagatatttgtcatagaaatggacttgcttatgcttctctatcaatggcggtacgatatttaattaatgcatattcaaattaactgt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  950452 ccttttggagatgcagatatttgtcatagaaatggacttgcttatgcttctttatcaatggcggtacaatatttaattaatgcatattcaaattaactgt 950353  T
Q  418 gaaattgtcaaaatcacggtaatcataataatacactatagttagttgataggttatctcgagttattaatttggtcaaagtgacttggagttgactact 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  950352 gaaattgtcaaaatcacggtaatcataataatacactatagttagttgataggttatctcgagttattagtttggtcaaagttacttggagttgactact 950253  T
Q  518 tcaactaatctctatatataggaatacacattgtactattacaattattattttaacaacctattcattctactatgaatttctatgagtatcttctaca 617  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  950252 tcaactaacctctatatataggaatacacattgtactatttcaattattattctaacaacctattcattctactatgaatttctatgagtatcttctaca 950153  T
Q  618 tgaatacgcatatgattgttttctttctgatcactatgatctctatctctg 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  950152 tgaatacgcatatgattgttttctttctgatcactatgatctctatctctg 950102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 252 - 664
Target Start/End: Original strand, 1101249 - 1101651
Alignment:
Q  252 tctacaggaaatctaggaaatttgcccttgattattgtcccagctgtatgtaaacaaacaggcaacccttttggagatgcagatatttgtcatagaaatg 351  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||| |||||||||| |||||||     
T  1101249 tctacacgaaatttaggaaatttgcccttgattattgccccagctgtttgtaaataaagaggcaacccttttggagatgcggatatttgtcgtagaaata 1101348  T
Q  352 gacttgcttatgcttctctatcaatggcggtacgatatttaattaatgcatattcaaattaactgtgaaattgtcaaaat---cacggtaatcataataa 448  Q
    |||||||||||||||||||||| |||||||||||||| || ||||||||||||| ||| |||| |||||||||||| |||    ||| |||||||| ||     
T  1101349 gacttgcttatgcttctctatcgatggcggtacgatacttgattaatgcatatttaaactaacggtgaaattgtcagaattacgacgataatcatagtat 1101448  T
Q  449 tacactatagttagttgataggttatctcgagttattaatttggtcaaagtgacttggagttgactacttcaactaatctctatatataggaatacacat 548  Q
    ||||||||||||||||| ||||||| || |||| | || |||||          || |||||   |||  ||||||||||||||||||    | | ||||    
T  1101449 tacactatagttagttgttaggttaactagagtaaatagtttgg----------ttagagttagttacaccaactaatctctatatat---gacatacat 1101535  T
Q  549 tgtactattacaattattattttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgat 648  Q
    ||||| |||   |||||| ||||||||| ||| |||||||||||||||||| ||||||| ||  | |||| ||||| | |||||||| ||| ||  ||||    
T  1101536 tgtaccattttgattattcttttaacaatctactcattctactatgaatttttatgagtgtcacccacataaatactcctatgattgctttgttgttgat 1101635  T
Q  649 cactatgatctctatc 664  Q
    || |||||||||||||    
T  1101636 cagtatgatctctatc 1101651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 1101079 - 1101183
Alignment:
Q  18 ggatggttggtagttaaattgatgagagttcctcatcatcttcaaggccttgtgttggggtgttgtgctgcaggtagaaaaattcacttacattttttaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1101079 ggatggttggtagttaaattgatgagagttcctcatcatcttcaaggccttgtgttggggtgttgtgctgcaggtagaaaaattcacttacattttttaa 1101178  T
Q  118 attat 122  Q
    |||||    
T  1101179 attat 1101183  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 568 - 664
Target Start/End: Original strand, 14939634 - 14939730
Alignment:
Q  568 ttttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 664  Q
    ||||| ||| ||||||||||||  |||| |||||| ||||||||||||||||| ||| |||||| ||| |||||| |||||||||||||||| ||||    
T  14939634 ttttatcaatctattcattctataatgagtttctacgagtatcttctacatgagtactcatatgcttgctttcttgctgatcactatgatctttatc 14939730  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 568 - 659
Target Start/End: Complemental strand, 31032115 - 31032024
Alignment:
Q  568 ttttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatct 659  Q
    ||||| ||| ||||||||||||  |||| ||||||||||||||| | |||||| ||| | |||| ||| |||||| ||||||||||||||||    
T  31032115 ttttatcaatctattcattctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgctgatcactatgatct 31032024  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 942550 - 942596
Alignment:
Q  45 gttcctcatcatcttcaaggccttgtgttggggtgttgtgctgcagg 91  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  942550 gttcctcgtcatcttcatggccttgtgatggggtgttgtgctgcagg 942596  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 664
Target Start/End: Original strand, 19473661 - 19473747
Alignment:
Q  578 ctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 664  Q
    ||||||||||||  |||| ||||||||||||||| | |||||| ||| | |||  ||| |||||| |||||||||||||||| ||||    
T  19473661 ctattcattctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgctgatcactatgatctttatc 19473747  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 664
Target Start/End: Original strand, 19544586 - 19544672
Alignment:
Q  578 ctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 664  Q
    ||||||||||||  |||| ||||||||||||||| | |||||| ||| | |||  ||| |||||| |||||||||||||||| ||||    
T  19544586 ctattcattctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgctgatcactatgatctttatc 19544672  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 664
Target Start/End: Complemental strand, 19588110 - 19588024
Alignment:
Q  578 ctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 664  Q
    ||||||||||||  |||| ||||||||||||||| | |||||| ||| | |||  ||| |||||| |||||||||||||||| ||||    
T  19588110 ctattcattctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgctgatcactatgatctttatc 19588024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 562 - 620
Target Start/End: Complemental strand, 29456122 - 29456064
Alignment:
Q  562 ttattattttaacaacctattcattctactatgaatttctatgagtatcttctacatga 620  Q
    ||||| ||||| ||| |||||||||||| |||| |||||||||||||||||| ||||||    
T  29456122 ttattcttttatcaatctattcattctattatgtatttctatgagtatcttccacatga 29456064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 664
Target Start/End: Complemental strand, 3379226 - 3379130
Alignment:
Q  568 ttttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 664  Q
    ||||| ||| ||||||||||||  |||| ||||||||||||||| | |||||| |||   |||  ||| |||||| ||||||| |||||||| ||||    
T  3379226 ttttatcaatctattcattctataatgagtttctatgagtatctcccacatgagtacttttatacttgctttcttgctgatcattatgatctttatc 3379130  T

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Target: scaffold0057 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 568 - 664
Target Start/End: Original strand, 58905 - 59001
Alignment:
Q  568 ttttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 664  Q
    ||||| ||| ||||||||||||  |||| ||||||||||||||| | |||||| ||| | |||| ||| |||||| |||||||||||||||| ||||    
T  58905 ttttatcaatctattcattctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgctgatcactatgatctttatc 59001  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 568 - 664
Target Start/End: Complemental strand, 5924897 - 5924801
Alignment:
Q  568 ttttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 664  Q
    ||||| ||| ||||||||||||  |||| ||||||||||||||| ||| |||||||| | |||| ||| ||| || |||||||||||||||| ||||    
T  5924897 ttttatcaatctattcattctataatgagtttctatgagtatctcctatatgaatactcttatgcttgcttttttactgatcactatgatctttatc 5924801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 659
Target Start/End: Original strand, 9487460 - 9487549
Alignment:
Q  568 ttttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatct 659  Q
    ||||| ||| ||||||||||||| |||||| |||  ||||||||   |||||||||  | |||| ||| |||||| ||||||||||||||||    
T  9487460 ttttatcaatctattcattctacaatgaatctct--gagtatctctcacatgaataatcttatgcttgctttcttgctgatcactatgatct 9487549  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 664
Target Start/End: Complemental strand, 52545214 - 52545118
Alignment:
Q  568 ttttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 664  Q
    ||||| ||| ||||||||||||  |||| ||||||||||||||| | |||||| ||| | |||| | | |||||| |||||||||||||||| ||||    
T  52545214 ttttatcaatctattcattctataatgagtttctatgagtatctcccacatgagtactcttatgctcgctttcttgctgatcactatgatctttatc 52545118  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 659
Target Start/End: Complemental strand, 20013022 - 20012943
Alignment:
Q  580 attcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatct 659  Q
    ||||||||||  |||| ||||||||||||||| | |||||| ||| | |||| ||| ||||||  |||||||||||||||    
T  20013022 attcattctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttggtgatcactatgatct 20012943  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 586 - 664
Target Start/End: Original strand, 24544757 - 24544835
Alignment:
Q  586 tctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 664  Q
    |||||||||| ||||||||||||||| |  ||||| ||| | |||| ||| |||||| || ||||||||||||| ||||    
T  24544757 tctactatgagtttctatgagtatctccctcatgagtactcttatgcttgctttcttgcttatcactatgatctttatc 24544835  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 665
Target Start/End: Complemental strand, 17148728 - 17148642
Alignment:
Q  579 tattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatct 665  Q
    ||||||||||||||| ||||||||||||||||| | |||||| |||   |||| ||| ||| ||  |||||| |||||||| |||||    
T  17148728 tattcattctactataaatttctatgagtatctcccacatgagtactgttatgtttgcttttttgatgatcattatgatctttatct 17148642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 30826135 - 30826167
Alignment:
Q  139 catatgcgggagctttagtgtaccagattgtcc 171  Q
    |||||||||||||||||||| ||||||||||||    
T  30826135 catatgcgggagctttagtgcaccagattgtcc 30826167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 31525803 - 31525835
Alignment:
Q  136 ctgcatatgcgggagctttagtgtaccagattg 168  Q
    ||||||||||||||||||||||||||| |||||    
T  31525803 ctgcatatgcgggagctttagtgtaccggattg 31525835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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