View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_44 (Length: 359)

Name: NF9461_low_44
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_44
NF9461_low_44
[»] chr7 (7 HSPs)
chr7 (14-157)||(29617771-29617914)
chr7 (158-212)||(223552-223607)
chr7 (173-208)||(26253085-26253120)
chr7 (158-222)||(9939426-9939491)
chr7 (158-222)||(10027618-10027683)
chr7 (158-222)||(29241530-29241595)
chr7 (159-222)||(36698744-36698808)
[»] chr6 (5 HSPs)
chr6 (158-221)||(24608306-24608371)
chr6 (158-222)||(30124176-30124240)
chr6 (173-222)||(11574463-11574512)
chr6 (155-205)||(30832685-30832735)
chr6 (14-46)||(31575578-31575610)
[»] chr4 (11 HSPs)
chr4 (156-213)||(3850593-3850651)
chr4 (155-208)||(16924662-16924715)
chr4 (158-218)||(31984820-31984881)
chr4 (173-222)||(979385-979434)
chr4 (163-205)||(40089330-40089372)
chr4 (158-205)||(38352507-38352554)
chr4 (241-271)||(3850680-3850710)
chr4 (157-222)||(25887285-25887351)
chr4 (158-222)||(29690934-29690999)
chr4 (173-222)||(45996891-45996940)
chr4 (173-213)||(7443710-7443750)
[»] chr3 (3 HSPs)
chr3 (158-222)||(11467757-11467822)
chr3 (158-222)||(25373625-25373690)
chr3 (173-212)||(40740227-40740266)
[»] chr8 (8 HSPs)
chr8 (156-222)||(45294580-45294647)
chr8 (161-222)||(4322486-4322548)
chr8 (173-222)||(1176226-1176275)
chr8 (158-222)||(33978655-33978720)
chr8 (173-222)||(7587911-7587960)
chr8 (173-222)||(9491942-9491991)
chr8 (158-222)||(15270126-15270191)
chr8 (158-222)||(33963498-33963563)
[»] chr5 (6 HSPs)
chr5 (158-222)||(31068109-31068174)
chr5 (173-222)||(8433576-8433625)
chr5 (158-221)||(35192177-35192240)
chr5 (173-219)||(41842825-41842871)
chr5 (175-205)||(15523691-15523721)
chr5 (175-205)||(39544277-39544307)
[»] chr2 (6 HSPs)
chr2 (241-342)||(52828-52929)
chr2 (157-203)||(5558751-5558797)
chr2 (173-218)||(52955-53000)
chr2 (173-222)||(7763664-7763713)
chr2 (173-216)||(35321186-35321229)
chr2 (173-213)||(34620195-34620235)
[»] chr1 (4 HSPs)
chr1 (173-222)||(12037605-12037653)
chr1 (172-222)||(24184492-24184542)
chr1 (241-342)||(12037669-12037770)
chr1 (173-222)||(52128451-52128500)
[»] scaffold0369 (1 HSPs)
scaffold0369 (158-222)||(14373-14438)
[»] scaffold0027 (1 HSPs)
scaffold0027 (158-205)||(4149-4197)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 29617771 - 29617914
Alignment:
Q  14 atcaaacaacgtcgcacatgaagatgaacaacacaactcgtaaataactatttccatacaaactcattttgaacctctatgcaactcaactagatcctaa 113  Q
    ||||||||||| || || ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29617771 atcaaacaacgccgtacctgacgatgaactacacaactcgtaaataactattttcatacaaactcattttgaacctctatgcaactcaactagatcctaa 29617870  T
Q  114 aacgccattgtcatgcattgattccttttcttctttcataatag 157  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  29617871 aacgccattgtcatgcattgattccatttcttctttcataatag 29617914  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 223552 - 223607
Alignment:
Q  158 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaattt 212  Q
    |||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||    
T  223552 cagggccggcaatgagggggtgcaaacagctctactgagctgggcgtccaaaattt 223607  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 208
Target Start/End: Original strand, 26253085 - 26253120
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaa 208  Q
    ||||||||||||||||| ||||||||||||||||||    
T  26253085 ggggtgcaaacagctcttctgagctgggcctccaaa 26253120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 9939491 - 9939426
Alignment:
Q  158 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  9939491 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 9939426  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 10027618 - 10027683
Alignment:
Q  158 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  10027618 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 10027683  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 29241595 - 29241530
Alignment:
Q  158 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  29241595 cagggccggccttggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 29241530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 36698808 - 36698744
Alignment:
Q  159 agggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    |||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  36698808 agggccggccttggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 36698744  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 24608371 - 24608306
Alignment:
Q  158 cagggccggccatgagggg--tgcaaacagctctactgagctgggcctccaaaatttgagggccca 221  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  |||||||    
T  24608371 cagggccggccatgaggggggtgcaaacagctctactgagctgggcctccaaaattttggggccca 24608306  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 30124240 - 30124176
Alignment:
Q  158 cagggccggccatgaggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||| | ||||||||||||||||||| |||| |||||||||||| |||| ||||||||    
T  30124240 cagggccggcctttaggggtgcaaacagctctaatgagttgggcctccaaattttgggggcccaa 30124176  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 11574463 - 11574512
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    |||||||||||||||||||||||||||||||| ||| |||| | ||||||    
T  11574463 ggggtgcaaacagctctactgagctgggcctcaaaattttgggtgcccaa 11574512  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 30832735 - 30832685
Alignment:
Q  155 tagcagggccggccatgaggggtgcaaacagctctactgagctgggcctcc 205  Q
    |||||||| || || ||||||||||||||||||| | ||||||||||||||    
T  30832735 tagcaggggcgtccttgaggggtgcaaacagctcaaatgagctgggcctcc 30832685  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 31575578 - 31575610
Alignment:
Q  14 atcaaacaacgtcgcacatgaagatgaacaaca 46  Q
    ||||||||||||||||||||| |||||||||||    
T  31575578 atcaaacaacgtcgcacatgacgatgaacaaca 31575610  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 3850593 - 3850651
Alignment:
Q  156 agcagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttg 213  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  3850593 agcagggccggccatgagggggtgcaaacagctatactgagctgggcctccaaaatttg 3850651  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 16924715 - 16924662
Alignment:
Q  155 tagcagggccggccatgaggggtgcaaacagctctactgagctgggcctccaaa 208  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||    
T  16924715 tagcagggccggccttgaggggtacaaacagctctactgagctgggccttcaaa 16924662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 31984881 - 31984820
Alignment:
Q  158 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggc 218  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||    
T  31984881 cagggccggccttgagggggtgcaaacagctctactgagccgggcctccaaaatttgggggc 31984820  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 979385 - 979434
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  979385 ggggtgcaaacagctctactgagctgggcctcctaaatttggaggcccaa 979434  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 40089330 - 40089372
Alignment:
Q  163 ccggccatgaggggtgcaaacagctctactgagctgggcctcc 205  Q
    |||||||||||||||||||||||||| || |||||||||||||    
T  40089330 ccggccatgaggggtgcaaacagctcaacagagctgggcctcc 40089372  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 38352554 - 38352507
Alignment:
Q  158 cagggccggccatgaggggtgcaaacagctctactgagctgggcctcc 205  Q
    |||| |||||| ||||||||||||||||||| || |||||||||||||    
T  38352554 caggcccggccctgaggggtgcaaacagctcaacagagctgggcctcc 38352507  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 3850680 - 3850710
Alignment:
Q  241 atatatgctgcatggaaataaataatatata 271  Q
    |||||||||||||||||||||||||||||||    
T  3850680 atatatgctgcatggaaataaataatatata 3850710  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 25887351 - 25887285
Alignment:
Q  157 gcagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    |||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  25887351 gcagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 25887285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 29690999 - 29690934
Alignment:
Q  158 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  29690999 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 29690934  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 45996940 - 45996891
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||||||||||| |||||||| |||| |||||||  |||||||    
T  45996940 ggggtgcaaacagctctaccgagctgggtctcccaaatttggaggcccaa 45996891  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 7443710 - 7443750
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttg 213  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  7443710 ggggtgcaaacagctctaccgaaccgggcctccaaaatttg 7443750  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 11467757 - 11467822
Alignment:
Q  158 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||    
T  11467757 cagggctggccatgagggggtgcaaacagctctactgagctgggccttcaaaattttagggcccaa 11467822  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 25373690 - 25373625
Alignment:
Q  158 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  25373690 cagggccgaccatgagggggtgcaaacagctctactgagctgggcctccaaaattttggggcccaa 25373625  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 40740227 - 40740266
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaattt 212  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  40740227 ggggtgcaaacagctctactgagttgggcctcctaaattt 40740266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 45294647 - 45294580
Alignment:
Q  156 agcagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    |||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||| ||||||||    
T  45294647 agcagggccgtccttgagggggtgcaaacagctctaatgagctgggcctccaaaatttgggggcccaa 45294580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 4322548 - 4322486
Alignment:
Q  161 ggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    |||||||||||||||| |||||||||||||| |||||||||||||| ||||||  ||||||||    
T  4322548 ggccggccatgagggggtgcaaacagctctattgagctgggcctcctaaattttggggcccaa 4322486  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 1176275 - 1176226
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  1176275 ggggtgcaaacagctctactgagctagacctccaaaatttgggggcccaa 1176226  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 33978720 - 33978655
Alignment:
Q  158 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||  |||||||    
T  33978720 cagggccggccttgagggggtgcaaacagctctactgagctgagcctccaaattttggaggcccaa 33978655  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 7587911 - 7587960
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    |||||||||||||||||||| |||||  |||||||||| || ||||||||    
T  7587911 ggggtgcaaacagctctactaagctgaacctccaaaatatgggggcccaa 7587960  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 9491991 - 9491942
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||||||||||||||||||| ||| |||| |||  ||||||||    
T  9491991 ggggtgcaaacagctctactgagctggaccttcaaattttaggggcccaa 9491942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 15270191 - 15270126
Alignment:
Q  158 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  15270191 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 15270126  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 33963563 - 33963498
Alignment:
Q  158 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||  |||||||| ||||  |||||||    
T  33963563 cagggccggccttgagggggtgcaaacagctctactgcgctgaacctccaaattttggaggcccaa 33963498  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 31068174 - 31068109
Alignment:
Q  158 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||  ||||||||    
T  31068174 cagggccggccataagggggtgcagacagctctactgagctgggcctccaaaattttggggcccaa 31068109  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 8433625 - 8433576
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||||||||    
T  8433625 ggggtgcaaacagctctaatgagctgggcctccaaattttgggggcccaa 8433576  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 35192177 - 35192240
Alignment:
Q  158 cagggccggccatgaggggtgcaaacagctctactgagctgggcctccaaaatttgagggccca 221  Q
    ||||||||| | || ||||||||||||||||||||||||||| |||||||| |||  |||||||    
T  35192177 cagggccggtcttgtggggtgcaaacagctctactgagctggacctccaaattttaggggccca 35192240  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 41842825 - 41842871
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcc 219  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  41842825 ggggtacaaacagctctactgagctgggccttcaaaatttgggggcc 41842871  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 205
Target Start/End: Original strand, 15523691 - 15523721
Alignment:
Q  175 ggtgcaaacagctctactgagctgggcctcc 205  Q
    |||||||||||||||||||||||||||||||    
T  15523691 ggtgcaaacagctctactgagctgggcctcc 15523721  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 205
Target Start/End: Original strand, 39544277 - 39544307
Alignment:
Q  175 ggtgcaaacagctctactgagctgggcctcc 205  Q
    |||||||||||||||||||||||||||||||    
T  39544277 ggtgcaaacagctctactgagctgggcctcc 39544307  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 241 - 342
Target Start/End: Complemental strand, 52929 - 52828
Alignment:
Q  241 atatatgctgcatggaaataaataatatatacatgcagcgcggaaggttatcatttattcctaaatggaagagcggtaagaatgggaatttacattgcat 340  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||  || |||  |||  ||||||||  ||| ||||||||||||||| | ||||||||    
T  52929 atatatgctgcatggaaataaataatatatacatgtggcgtggaaaattttcaagtatgtctaaatggttgagtggtaagaatgggaatctgcattgcat 52830  T
Q  341 ag 342  Q
    ||    
T  52829 ag 52828  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 5558797 - 5558751
Alignment:
Q  157 gcagggccggccatgaggggtgcaaacagctctactgagctgggcct 203  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  5558797 gcagggccgggcatgaggggtgcaaacagctctattgagctgggcct 5558751  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 53000 - 52955
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggc 218  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  53000 ggggtgcaagcagctctactgagctgggcctccaaaatttgggggc 52955  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 7763664 - 7763713
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||||||||||||||| ||||| ||||||||||| | ||||||    
T  7763664 ggggtgcaaacagctctactgagttgggcttccaaaatttgggagcccaa 7763713  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 35321229 - 35321186
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttgagg 216  Q
    |||||||||||||||||||||| ||||||||||||  |||||||    
T  35321229 ggggtgcaaacagctctactgaactgggcctccaatttttgagg 35321186  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 34620235 - 34620195
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttg 213  Q
    |||||||||||| |||||||||||| |||||||||| ||||    
T  34620235 ggggtgcaaacaactctactgagctaggcctccaaattttg 34620195  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 12037605 - 12037653
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12037605 ggggtgcaaacagctctactgagctgggcctccaaaattt-agggcccaa 12037653  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 24184542 - 24184492
Alignment:
Q  172 aggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    |||||||||||||||| || ||||||||||||||||| |||| ||||||||    
T  24184542 aggggtgcaaacagctatattgagctgggcctccaaattttgggggcccaa 24184492  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 342
Target Start/End: Original strand, 12037669 - 12037770
Alignment:
Q  241 atatatgctgcatggaaataaataatatatacatgcagcgcggaaggttatcatttattcctaaatggaagagcggtaagaatgggaatttacattgcat 340  Q
    |||||||||||| ||||||||||| ||||||| ||  ||||| || ||| |||  |||  |||| |||  |||||||||||||||||| ||  |||||||    
T  12037669 atatatgctgcacggaaataaatagtatatacttgtggcgcgaaaagttttcaagtatgtctaactggccgagcggtaagaatgggaaattgtattgcat 12037768  T
Q  341 ag 342  Q
    ||    
T  12037769 ag 12037770  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 52128500 - 52128451
Alignment:
Q  173 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    |||||||||||||||||| || ||||||||||| |||||||  |||||||    
T  52128500 ggggtgcaaacagctctattgggctgggcctcctaaatttggaggcccaa 52128451  T

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Target: scaffold0369 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 14373 - 14438
Alignment:
Q  158 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 222  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  14373 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 14438  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 4149 - 4197
Alignment:
Q  158 cagggccggccatgag-gggtgcaaacagctctactgagctgggcctcc 205  Q
    ||||||||||| |||| ||||||||||||||| || |||||||||||||    
T  4149 cagggccggccctgagagggtgcaaacagctcaacagagctgggcctcc 4197  T

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