View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9461_low_45 (Length: 351)
Name: NF9461_low_45
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 34042194 - 34042526
Alignment:
| Q |
18 |
tctttttggtcactattaagtccacttggcaattttaccactagtctattaatagacctcctttgttgatttatactactactaaattagaagaaaaatg |
117 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34042194 |
tcttttcggtcagtattaagtccacttggcaattttaccactagtctattaatagacctcctttgttgatttatactactactaaattagaagaaaaatg |
34042293 |
T |
|
| Q |
118 |
atatggacgcatttaaagcatttatttaagtcaccgattatcgtgttcagtagcgttggatgatcctgcacagtgacacaaaaatgtgttttccatttag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34042294 |
atatggacgcatttaaagcatttatttaagtcaccgattatcgtgttcagtagcgttggatgatcctgcacagtgacacaaaaatgtgttttccatttag |
34042393 |
T |
|
| Q |
218 |
aatttgtttgagtcatatatgaatgaatgatcatcacagttgcagtaaaatgattgatatagac-ttgtataaatcggtaggtttatcaatatgggtcca |
316 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34042394 |
aatttgttcgagtcatatatgaatgaatgatcatcacagttgcagtaaaatgattgatatagactttgtataaatcggtaggtttatcaatatgggtcca |
34042493 |
T |
|
| Q |
317 |
ttgttgattgttcaaagtagaataatctaccca |
349 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |
|
|
| T |
34042494 |
ttgttgattgttcaaagtagaatagtccaccca |
34042526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University