View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9461_low_48 (Length: 343)
Name: NF9461_low_48
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_48 |
 | |
|
| [»] scaffold0642 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0224 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 42715070 - 42715385
Alignment:
| Q |
1 |
ttggaaccaaaacacctccattgaacgagccaacacttcaatagaagtaagttaagtaactgaaatagaataattaactcagaaaattaatgtaaaacca |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42715070 |
ttggaaccaaaacacctccattgaatgagccaatacttcaatagaagaaagttatgtaactgaaatagaataattaactcataaaattaatgtaaaacca |
42715169 |
T |
|
| Q |
101 |
attcaagttttctacatttgacaccttttgcacaaaatggtaaaatcaaattggaaagtgacaacatgaaaagcatgaaaaatataatttgatcacatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42715170 |
attcaagttttctacatttgacaccttttgtacaaaatggtaaaaccaaattggaaagtgacaa---------catgaaaaatataatttgatcacatat |
42715260 |
T |
|
| Q |
201 |
tcttccaataataaaggtgatgaactgacatctttttcaaatctctctctaaagttctagtaaatgtcagttagtaaactaacctctctttttcaaatct |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42715261 |
tcttccaataataaaggtgatggactgacatcattttcaaatctctctctaaagttctagtaaatgtcagttagtaaactaacctctgtttttcaaatct |
42715360 |
T |
|
| Q |
301 |
ttctccaaaatactcaagtgtcaat |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42715361 |
ttctccaaaatactcaagtgtcaat |
42715385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 42 - 325
Target Start/End: Complemental strand, 3380360 - 3380070
Alignment:
| Q |
42 |
tagaagtaagttaagtaactgaaatagaataattaactcagaaaatta-atgtaaaaccaattcaagt------tttctacatttgacaccttttgcaca |
134 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||| |||||| |
|
|
| T |
3380360 |
tagaagaaagttatgtagctgaaatagaataattaactcagaaaacactatgtaaaaccaatccaaatccaaattttctacatttgacaccttctgcaca |
3380261 |
T |
|
| Q |
135 |
aaatggtaaaatcaaattggaaagtgacaacatgaaaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctt |
234 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||| | |||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
3380260 |
aaatggtaaaacaaaattggaaagtgacaacataaaaggcatggaaaatataattcattgacatataattccaatactaaagatgatgaactgacatctt |
3380161 |
T |
|
| Q |
235 |
tttcaaatctctctctaaagttctagtaaatgtcagttagtaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaat |
325 |
Q |
| |
|
|| |||||||||||| ||||||||| || | |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3380160 |
ttccaaatctctctccaaagttctaatacttaccagtcagcaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaat |
3380070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 42 - 325
Target Start/End: Complemental strand, 6140 - 5850
Alignment:
| Q |
42 |
tagaagtaagttaagtaactgaaatagaataattaactcagaaaatta-atgtaaaaccaattcaagt------tttctacatttgacaccttttgcaca |
134 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||| |||||| |
|
|
| T |
6140 |
tagaagaaagttatgtagctgaaatagaataattaactcagaaaacactatgtaaaaccaatccaaatccaaattttctacatttgacaccttctgcaca |
6041 |
T |
|
| Q |
135 |
aaatggtaaaatcaaattggaaagtgacaacatgaaaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctt |
234 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||| | ||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
6040 |
aaatggtaaaaaaaaattggaaagtgacaacataaaaggcatggaaaatataattcattgacatattattccaatactaaagatgatgaactgacatctt |
5941 |
T |
|
| Q |
235 |
tttcaaatctctctctaaagttctagtaaatgtcagttagtaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaat |
325 |
Q |
| |
|
|| |||||||||||| ||||||||| || | |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5940 |
ttccaaatctctctccaaagttctaatacttaccagtcagcaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaat |
5850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 42 - 325
Target Start/End: Complemental strand, 16052 - 15762
Alignment:
| Q |
42 |
tagaagtaagttaagtaactgaaatagaataattaactcagaaaatta-atgtaaaaccaattcaagt------tttctacatttgacaccttttgcaca |
134 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||| |||||| |
|
|
| T |
16052 |
tagaagaaagttatgtagctgaaatagaataattaactcagaaaacactatgtaaaaccaatccaaatccaaattttctacatttgacaccttctgcaca |
15953 |
T |
|
| Q |
135 |
aaatggtaaaatcaaattggaaagtgacaacatgaaaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctt |
234 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||| | ||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
15952 |
aaatggtaaaaaaaaattggaaagtgacaacataaaaggcatggaaaatataattcattgacatattattccaatactaaagatgatgaactgacatctt |
15853 |
T |
|
| Q |
235 |
tttcaaatctctctctaaagttctagtaaatgtcagttagtaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaat |
325 |
Q |
| |
|
|| |||||||||||| ||||||||| || | |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15852 |
ttccaaatctctctccaaagttctaatacttaccagtcagcaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaat |
15762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 42 - 325
Target Start/End: Original strand, 22929 - 23219
Alignment:
| Q |
42 |
tagaagtaagttaagtaactgaaatagaataattaactcagaaaatta-atgtaaaaccaattcaagt------tttctacatttgacaccttttgcaca |
134 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||| |||||| |
|
|
| T |
22929 |
tagaagaaagttatgtagctgaaatagaataattaactcagaaaacactatgtaaaaccaatccaaatccaaattttctacatttgacaccttctgcaca |
23028 |
T |
|
| Q |
135 |
aaatggtaaaatcaaattggaaagtgacaacatgaaaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctt |
234 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||| | ||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
23029 |
aaatggtaaaaaaaaattggaaagtgacaacataaaaggcatggaaaatataattcattgacatattattccaatactaaagatgatgaactgacatctt |
23128 |
T |
|
| Q |
235 |
tttcaaatctctctctaaagttctagtaaatgtcagttagtaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaat |
325 |
Q |
| |
|
|| |||||||||||| ||||||||| || | |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23129 |
ttccaaatctctctccaaagttctaatacttaccagtcagcaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaat |
23219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 42 - 325
Target Start/End: Original strand, 51816 - 52106
Alignment:
| Q |
42 |
tagaagtaagttaagtaactgaaatagaataattaactcagaaaatta-atgtaaaaccaattcaagt------tttctacatttgacaccttttgcaca |
134 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||| |||||| |
|
|
| T |
51816 |
tagaagaaagttatgtagctgaaatagaataattaactcagaaaacactatgtaaaaccaatccaaatccaaattttctacatttgacaccttctgcaca |
51915 |
T |
|
| Q |
135 |
aaatggtaaaatcaaattggaaagtgacaacatgaaaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctt |
234 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||| | ||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
51916 |
aaatggtaaaacaaaattggaaagtgacaacataaaaggcatggaaaatataattcattgacatattattccaatactaaagatgatgaactgacatctt |
52015 |
T |
|
| Q |
235 |
tttcaaatctctctctaaagttctagtaaatgtcagttagtaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaat |
325 |
Q |
| |
|
|| |||||||||||| ||||||||| || | |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52016 |
ttccaaatctctctccaaagttctaatacttaccagtcagcaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaat |
52106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 7e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 42 - 325
Target Start/End: Complemental strand, 44497627 - 44497337
Alignment:
| Q |
42 |
tagaagtaagttaagtaactgaaatagaataattaactcagaaaatta-atgtaaaaccaattcaagt------tttctacatttgacaccttttgcaca |
134 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||| |||||| |
|
|
| T |
44497627 |
tagaagaaagttatgtagctgaaatagaataattaactcagaaaacactatgtaaaaccaatccaaatccaaattttctacatttgacaccttctgcaca |
44497528 |
T |
|
| Q |
135 |
aaatggtaaaatcaaattggaaagtgacaacatgaaaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctt |
234 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| ||| ||||| ||||||||||| | ||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
44497527 |
aaatggtaaaacaaaattggaaagtgacagcataaaaggcatggaaaatataattcattgacatattattccaatactaaagatgatgaactgacatctt |
44497428 |
T |
|
| Q |
235 |
tttcaaatctctctctaaagttctagtaaatgtcagttagtaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaat |
325 |
Q |
| |
|
|| |||||||||||| ||||||||| || | |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44497427 |
ttccaaatctctctccaaagttctaatacttaccagtcagcaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaat |
44497337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 24469632 - 24469727
Alignment:
| Q |
42 |
tagaagtaagttaagtaactgaaatagaataattaactcagaaaattaatgtaaaaccaattcaagttttctacatttgacaccttttgcacaaaa |
137 |
Q |
| |
|
|||||| || ||| ||| ||||||||||||||||| ||||||||| ||||||||||||| | ||||||| |||| ||||| ||||||||||||| |
|
|
| T |
24469632 |
tagaagaaacttatgtagctgaaatagaataattagctcagaaaagctatgtaaaaccaatcctagttttccacatctgacaacttttgcacaaaa |
24469727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 24469731 - 24469811
Alignment:
| Q |
161 |
acaacatgaaaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctttttcaaa |
241 |
Q |
| |
|
||||||||||| ||||| | ||||||||| | |||||||||||||| | |||||||||| ||||||||||||| |||| |
|
|
| T |
24469731 |
acaacatgaaaggcatggataatataattcattgacatattcttccaacactaaaggtgatagactgacatcttttacaaa |
24469811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 192 - 325
Target Start/End: Original strand, 23143 - 23276
Alignment:
| Q |
192 |
atcacatattcttccaataataaaggtgatgaactgacatctttttcaaatctctctctaaagttctagtaaatgtcagttagtaaactaacctctcttt |
291 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23143 |
atcacatattcttcgaataataaaggtgatcaactgacatctttttcaaatctctctctaaagttctagtatatgtcagttagtaaactaacctctcttt |
23242 |
T |
|
| Q |
292 |
ttcaaatctttctccaaaatactcaagtgtcaat |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23243 |
ttcaaatctttctccaaaatactcaagtgtcaat |
23276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 192 - 325
Target Start/End: Original strand, 42836062 - 42836195
Alignment:
| Q |
192 |
atcacatattcttccaataataaaggtgatgaactgacatctttttcaaatctctctctaaagttctagtaaatgtcagttagtaaactaacctctcttt |
291 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42836062 |
atcacatattcttcgaataataaaggtgatcaactgacatctttttcaaatctctctctaaagttctagtatatgtcagttagtaaactaacctctcttt |
42836161 |
T |
|
| Q |
292 |
ttcaaatctttctccaaaatactcaagtgtcaat |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42836162 |
ttcaaatctttctccaaaatactcaagtgtcaat |
42836195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 42 - 325
Target Start/End: Original strand, 36930809 - 36931091
Alignment:
| Q |
42 |
tagaagtaagttaagtaactgaaatagaataattaactcagaaaatta-atgtaaaaccaattcaagttttctacatttgacacctttt-gcacaaaatg |
139 |
Q |
| |
|
|||||| |||||| ||| ||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
36930809 |
tagaagaaagttatgtagatgaaatataataattaactcagaaaaaactatgtaaaaccaac-caaattttctacatttgacacttttttgcacaaaatg |
36930907 |
T |
|
| Q |
140 |
gtaaaatcaaattggaaagtgacaacatgaaaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctttttca |
239 |
Q |
| |
|
|||||| | ||||||||||| | ||||||| ||||||||| ||||||| | |||||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
36930908 |
gtaaaaaatatttggaaagtgatagcatgaaaggcatgaaaa-tataattcattgacatattcttccaatactaaag-tgatgaactgacatgtttttca |
36931005 |
T |
|
| Q |
240 |
aatctctctctaaagttctagtaaatgtcagttagtaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaat |
325 |
Q |
| |
|
|||| |||| || |||||| || | ||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
36931006 |
aatcattctccaacgttctaatacttatcagtcagtaaactaacctctctttttcaaatctttctctgaaatactcaagtctcaat |
36931091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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