View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_5 (Length: 662)
Name: NF9461_low_5
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 586; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 18 - 644
Target Start/End: Complemental strand, 29007740 - 29007114
Alignment:
| Q |
18 |
aataacgaacggttcattggatatgtgatgattggcagtgtttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007740 |
aataacgaacggttcattggatatgtgatgattggcagtgtttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgt |
29007641 |
T |
|
| Q |
118 |
acaatagcaaatgccatttccacacacaacactggagaaacagtgatccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007640 |
acaatagcaaatgccatttccacacacaacactggagaaacagtgatccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcatt |
29007541 |
T |
|
| Q |
218 |
gtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagttctccaccacgccctcattctcctcc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29007540 |
gtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagttctgcaccacgccctcattctcctcc |
29007441 |
T |
|
| Q |
318 |
tagtccaccgaatggtgattctcctcctagtccaccacacagtgattctcctcctagtcctccagatgcacatgctaaagcgccttgtgattgttcttgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007440 |
tagtccaccgaatggtgattctcctcctagtccaccacacagtgattctcctcctagtcctccagatgcacatgctaaagcgccttgtgattgttcttgt |
29007341 |
T |
|
| Q |
418 |
gcagatgagggtcgtttgggtgttccattgattacactcgtaatcatccgagctttcgcttggtcttannnnnnngttcacctttcagctatcaactagc |
517 |
Q |
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| T |
29007340 |
gcagatgagggtcgtttgggtgttccattgattacactcgtaatcatcttagctttcgcttggtcttctttttttgttcacctttcagctatcaactagc |
29007241 |
T |
|
| Q |
518 |
tagctcacactagacagtttatttcactgatgtgggtgtttggtcatttataatgacatattgtttagtacatatagattgtgatttggtttagtgactt |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007240 |
tagctcacactagacagtttatttcactgatgtgggtgtttggtcattcataatgacatattgtttagtacatatagattgtgatttggtttagtgactt |
29007141 |
T |
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| Q |
618 |
tagtcaattgttccaaagtgagtgatg |
644 |
Q |
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| T |
29007140 |
tagtcaattgttccaaagtgagtgatg |
29007114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 29 - 326
Target Start/End: Original strand, 21409490 - 21409776
Alignment:
| Q |
29 |
gttcattggatatgtgatgattggcagtgtttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaa |
128 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21409490 |
gttcattggatatgtgatgattgacagtgtttacttacacaccgttgtacgacgtaattgaggtaaaccaacaagggtacaacacatgtacaatagcaaa |
21409589 |
T |
|
| Q |
129 |
tgccatttccacacacaacactggagaaacagtgatccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggc |
228 |
Q |
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||||||||| ||| ||||| | |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
21409590 |
tgccatttcgacatacaactcaggagaaacagtgatccacgtcattgaatcaggaaaacgctacttcgtttgtggcagaatgggccattgccaacaaggc |
21409689 |
T |
|
| Q |
229 |
ctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagttctccaccacgccctcattctcctcctagtccacc |
326 |
Q |
| |
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|| ||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
21409690 |
ctgaaactcaaagtcaaagttcaagctcagtccaacaaca-----------cctccacctatttctccaccatgccctcattctcctcctagtccacc |
21409776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 192 - 326
Target Start/End: Original strand, 21465429 - 21465563
Alignment:
| Q |
192 |
cttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagt |
291 |
Q |
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||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21465429 |
cttcgtttgtggcagaatgggccattgccaacaaggcctgaaactcaaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctatt |
21465528 |
T |
|
| Q |
292 |
tctccaccacgccctcattctcctcctagtccacc |
326 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
21465529 |
tctccaccatgccctcattctcctcctagtccacc |
21465563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 21461779 - 21461926
Alignment:
| Q |
29 |
gttcattggatatgtgatgattggcagtgtttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaa |
128 |
Q |
| |
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||||||||||||||||||||||| ||| |||||||||||||||||| ||| |||| || ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21461779 |
gttcattggatatgtgatgattgacagcgtttacttacacaccgttgtacaacgtaattgaggtaaaccaacaagggtacaacacatgtacaatagcaaa |
21461878 |
T |
|
| Q |
129 |
tgccatttccacacacaacactggagaaacagtgatccacctcactga |
176 |
Q |
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||| |||| ||| ||||| ||||||||| |||||||||||||||||| |
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| T |
21461879 |
cgccgtttcgacatacaactctggagaaatagtgatccacctcactga |
21461926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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