View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_52 (Length: 338)
Name: NF9461_low_52
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 1540046 - 1539724
Alignment:
| Q |
1 |
ccgagtaataaccttgtccgaaaatatgccccctccccgtgtcatgagaagagtgtgattatgaaattaagcttcaaacttttttcttctttcataacag |
100 |
Q |
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| T |
1540046 |
ccgagtaataaccttgtccgaaaatatgccccctccccgtgtcatgagaagagtgtgattatgaaattaagcttcaaactttcttcttctttcataacag |
1539947 |
T |
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| Q |
101 |
ataactttaaatactaaattgttttaacctatttctaataggtatgaagagcatggagcttcatatatccaaaggaagtgtccttgagctgtgattggta |
200 |
Q |
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| T |
1539946 |
ataactttaaatactaaattgttttaacctatttctaataggtatgaagagcatggagcttcatatatccaaaggaagtgtccttgagctgtgattggta |
1539847 |
T |
|
| Q |
201 |
tgagtatcccgccactgtctaccgatgattttatcttttgctgttaatgctgtttattcccattggattggatctctgcctaactgtattgaatggatca |
300 |
Q |
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| T |
1539846 |
tgagtatcccgccactgtctaccgatgattttatcttttgctgttaatgctgtttattcccattggattggatctctgcctaactgtattgaatggatca |
1539747 |
T |
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| Q |
301 |
caatctattagttatgcagcggt |
323 |
Q |
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| T |
1539746 |
caatctattagttatgcagcggt |
1539724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 23035590 - 23035688
Alignment:
| Q |
100 |
gataactttaaatactaaattgttttaacctatttctaataggtatgaagagcatggagcttcatatatccaaaggaagtgtccttgagctgtgattgg |
198 |
Q |
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| T |
23035590 |
gataaccttaaacactaaattgttttaatgcacttctaataggtatgaagagcatggagcttcatatatccaaaggaaatgtccttgagttgcgattgg |
23035688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 1757640 - 1757585
Alignment:
| Q |
133 |
ttctaataggtatgaagagcatggagcttcatatatccaaaggaagtgtccttgag |
188 |
Q |
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| T |
1757640 |
ttctgataggtatgaagaacatggagcttcatacatccaaaggaagtgtccttgag |
1757585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 28018024 - 28018122
Alignment:
| Q |
100 |
gataactttaaatactaaattgttttaacctatttctaataggtatgaagagcatggagcttcatatatccaaaggaagtgtccttgagctgtgattgg |
198 |
Q |
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| T |
28018024 |
gataaccttaaacactaaattgttttcatgcacttctaataggtatgaagagcatggagcttcatatatccaaaggaaatgtccttgagttgcgattgg |
28018122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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