View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_54 (Length: 335)
Name: NF9461_low_54
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 43696005 - 43695693
Alignment:
| Q |
1 |
atttgtgttgtgtgcaatcactaccaccatgtttggtttagagaagnnnnnnnngtggagggaaagaaagtaaaaaattaaattatagctccatttattt |
100 |
Q |
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| T |
43696005 |
atttgtgctgtgtgcaatcactaccaccatgtttggtttagagaagaaaaaaaagtggagggaaagaaagtaaaaaattaaattatagctccatttattt |
43695906 |
T |
|
| Q |
101 |
gctacaatatttctacttgtattgaaccagatcaggtgaaaaccatctacattcaaaccatactttagttactactatgataggttgtcattactaatgg |
200 |
Q |
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|||| | |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43695905 |
gctaaa---tttctacttgtattgaaccagatcaggtgaaaac-acctagattcaaaccatactttagttactactatgataggttgtcattactaatgg |
43695810 |
T |
|
| Q |
201 |
cggcatcacatgttgtcctaatcctaaatatacaagaccaagaaaggagcactaccactgctcttgaaccaaaaagcttacgttttttgtgatcattgtc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43695809 |
cggcatcacatgttgtcctaatcctaaatatacaagaccaagaaaggagcactaccactgctcttaaaccaaaaagcttacgttttttgtgatcattgtc |
43695710 |
T |
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| Q |
301 |
actcttaatttctctaa |
317 |
Q |
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||||||||||||||||| |
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| T |
43695709 |
actcttaatttctctaa |
43695693 |
T |
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