View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_56 (Length: 331)
Name: NF9461_low_56
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 50670111 - 50670431
Alignment:
| Q |
1 |
agtagaaacatcaacattaaataaccgatgctcctaattcaatgaaaaaagctaagaaaaacaa-gagagannnnnnngtt-aaaatgtatgtaacacat |
98 |
Q |
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| T |
50670111 |
agtagaaacatcaacattaaataaccgatgctcctaattcaatgaaaaaagctaagaaaaacaaagagagatttttttgtttaaaatgtatgtaacacgt |
50670210 |
T |
|
| Q |
99 |
cagcatgtcctgatgttcttttctctacttaagtttgccaagtttcatatcggtaagaaatgaacctatgtttgggttaatttggcagctaatattttaa |
198 |
Q |
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| T |
50670211 |
caacatgtcctgatgttcttttctctacttaagtttgccaagtttcatatcagtaagaaatgaacctatgtttgggttaatttggcagctaatattttta |
50670310 |
T |
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| Q |
199 |
nnnnnnncaccccttcattctattgattcctaacttgttacaattacatccttttctaccagaactccgatatagtggactcattcctttattggcatag |
298 |
Q |
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| T |
50670311 |
tttttttcacccctttattctattgattcctaacttgttacaattacatccttttctaccagaactccgatatagtggactcattcctttattggcatag |
50670410 |
T |
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| Q |
299 |
tttggattagttatattttga |
319 |
Q |
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| T |
50670411 |
tttggattacttatattttga |
50670431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 50665038 - 50665071
Alignment:
| Q |
286 |
tttattggcatagtttggattagttatattttga |
319 |
Q |
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| T |
50665038 |
tttattggcatagtttggattacttatattttga |
50665071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 50249004 - 50248968
Alignment:
| Q |
283 |
tcctttattggcatagtttggattagttatattttga |
319 |
Q |
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|||||||| |||||||||||||||| ||||||||||| |
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| T |
50249004 |
tcctttatcggcatagtttggattacttatattttga |
50248968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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