View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_57 (Length: 331)
Name: NF9461_low_57
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_57 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 15196229 - 15196565
Alignment:
| Q |
1 |
ttccccattgttcagtatttacgata------ttgatattggttggggaagtccagtggcgattcgaagtggtagttcaaataaaagtaatggaaagatt |
94 |
Q |
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| T |
15196229 |
ttccccattgttcagtatttatgatattgatattgatattggttggggaagtcctgtggcgattcgaagtggtagttcaaataaaagtaatggaaagatt |
15196328 |
T |
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| Q |
95 |
agtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaagtcatgggaaatgactctgagttaaacatga |
194 |
Q |
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| T |
15196329 |
agtgtgtttgctggtaaagaagaaggaagtatggactttgaagtgtgtcttccatacaagattttggaggtcatgggaaatgaccctgacttaaacatga |
15196428 |
T |
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| Q |
195 |
ctgatgcatccatttggaacctcgatcctctgcaaccttcattacttcgcagtcggttgtaggctgttacatactccctccgtccctatatgtaagcann |
294 |
Q |
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| T |
15196429 |
ctgatgcatccacttggaaccttgatcctctacaaccttcatcactttgcagtcggctgtaggctgttacatactccctccgtccctatatgtaagcatc |
15196528 |
T |
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| Q |
295 |
nnnnncttctaataaaaatgtgtttagatatagggac |
331 |
Q |
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| T |
15196529 |
tttttcttctaataaaagggtgcttagatatagggac |
15196565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 11968899 - 11968810
Alignment:
| Q |
72 |
caaataaaagtaatggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttgga |
162 |
Q |
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| T |
11968899 |
caaataaaaaaaatggaaagattagtgtctttcctg-tgtagaagaaggtagtatagactttgaagtgtgtcttccttacaagattttgga |
11968810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 6500451 - 6500380
Alignment:
| Q |
93 |
ttagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaag |
164 |
Q |
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| T |
6500451 |
ttagtgtatttgctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaag |
6500380 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 8999028 - 8998938
Alignment:
| Q |
57 |
ttcgaagtggtagttcaaataaaagtaatggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttcc |
147 |
Q |
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| T |
8999028 |
ttcgaagtggcacttcaaataaaagcaatggaaaaattactgtgtttcctggtacagaaaaaggtattatggattttgaagtgtgtcttcc |
8998938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 39082345 - 39082257
Alignment:
| Q |
57 |
ttcgaagtggtagttcaaataaaagtaatggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtctt |
145 |
Q |
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| T |
39082345 |
ttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctggagctgaagaaggtagcattgatattgaagtttgtctt |
39082257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 40147524 - 40147617
Alignment:
| Q |
85 |
tggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaagtcatgggaaatgac |
178 |
Q |
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| T |
40147524 |
tggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgac |
40147617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 8102399 - 8102323
Alignment:
| Q |
101 |
tttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaagtcatgggaaatga |
177 |
Q |
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| T |
8102399 |
tttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga |
8102323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 4473 - 4354
Alignment:
| Q |
28 |
tgatattggttggggaagtccagtggcgattcgaagtggtagttcaaataaaagtaatggaaagattagtgtgtttgctggtaaagaagaaggaagtatg |
127 |
Q |
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|||| |||||||||||| || |||| | |||||||||| ||||||||||||| |||||||||||| ||||| ||| ||| |||||| || || ||| |
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| T |
4473 |
tgattttggttggggaaaacctgtgggggttcgaagtgggggttcaaataaaagaaatggaaagatttatgtgtatgcaggtgtagaagatggtagcatg |
4374 |
T |
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| Q |
128 |
gactttgaagtttgtcttcc |
147 |
Q |
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||| ||||||| |||||||| |
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| T |
4373 |
gaccttgaagtatgtcttcc |
4354 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 292
Target Start/End: Original strand, 18121897 - 18121928
Alignment:
| Q |
261 |
ttacatactccctccgtccctatatgtaagca |
292 |
Q |
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| T |
18121897 |
ttacatactccctccgtccctatatgtaagca |
18121928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 8936278 - 8936344
Alignment:
| Q |
112 |
agaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaagtcatgggaaatgac |
178 |
Q |
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| T |
8936278 |
agaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatgac |
8936344 |
T |
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