View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_62 (Length: 324)
Name: NF9461_low_62
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 32958137 - 32957828
Alignment:
| Q |
1 |
tgatctattggttaagatttatttcaaaggtgttcatccaaaattccctagtggtggcctaatgtctcaacacttagattcattgcctattggttctatt |
100 |
Q |
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| T |
32958137 |
tgatctattggttaagatttatttcaaaggtgttcatccaaaattccctagtggtggcctaatgtctcaacacttagattcattgcctattggttctatt |
32958038 |
T |
|
| Q |
101 |
ttggatataaagggtccattgggacacatagaatacactggtagaggaaattttcttgttcatggtaaacacaagtttgcaaagaggttagctatgttgg |
200 |
Q |
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| T |
32958037 |
ttggatataaagggtccattgggacacatagaatacattggtagaggaaattttcttgttcatggtaaacacaagtttgcaaagaggttagctatgttgg |
32957938 |
T |
|
| Q |
201 |
ccggaggaacggggataacaccgatttaccaagtggtacaagcgattctaaaagatccgaaggatctaactgaaatatatgttgtgtatgctaatcgaag |
300 |
Q |
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| T |
32957937 |
ccggaggaacggggataacaccgatttaccaagtggtacaagcgattctaaaagatctgaaggatctaactgaaatatatgttgtgtatgctaatcgaag |
32957838 |
T |
|
| Q |
301 |
cgaggatgat |
310 |
Q |
| |
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|||||||||| |
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| T |
32957837 |
cgaggatgat |
32957828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 32987501 - 32987192
Alignment:
| Q |
1 |
tgatctattggttaagatttatttcaaaggtgttcatccaaaattccctagtggtggcctaatgtctcaacacttagattcattgcctattggttctatt |
100 |
Q |
| |
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||||||| ||||||||||||| || ||||| || |||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||||| || | |
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| T |
32987501 |
tgatctagtggttaagatttacttaaaaggggtgcatccaaagttccctaatggtggcctaatgtctcaacacttggattcaatgcctattggctcaacc |
32987402 |
T |
|
| Q |
101 |
ttggatataaagggtccattgggacacatagaatacactggtagaggaaattttcttgttcatggtaaacacaagtttgcaaagaggttagctatgttgg |
200 |
Q |
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||||||||||| |||||||| ||||||||||| || ||||||||||||| ||| | ||||| ||||| ||||| ||||||||||| |||||||||||| |
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| T |
32987401 |
ttggatataaaaggtccattaggacacatagagtatgctggtagaggaaactttatggttcacggtaagcacaaatttgcaaagagactagctatgttgg |
32987302 |
T |
|
| Q |
201 |
ccggaggaacggggataacaccgatttaccaagtggtacaagcgattctaaaagatccgaaggatctaactgaaatatatgttgtgtatgctaatcgaag |
300 |
Q |
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|||| |||| ||||||||||| |||||||||||||| ||||| ||||||||||| || | |||||||||||| | |||||||||||||||||||||| |
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| T |
32987301 |
ccggtggaagtgggataacaccaatttaccaagtggttcaagcaattctaaaagacccagaagatctaactgaattgcatgttgtgtatgctaatcgaag |
32987202 |
T |
|
| Q |
301 |
cgaggatgat |
310 |
Q |
| |
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|||||||||| |
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| T |
32987201 |
cgaggatgat |
32987192 |
T |
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