View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_65 (Length: 310)
Name: NF9461_low_65
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 17395789 - 17395517
Alignment:
| Q |
19 |
gtacctgcaaaattaccacaatagaaacaagaagaggatttcaagagagaaatttttcgacgaaagatatggaaaccctccacctgataagattcccccg |
118 |
Q |
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| T |
17395789 |
gtacctgcaaaattaccacaacagaaacaaaaagaggatttcaagagagcaatttttcgacgaaagatatggaatccctccaccagagaagatgccctca |
17395690 |
T |
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| Q |
119 |
ctgacttatttacctcctccttgtccacatccagacccctaaccaccacatcaagagggagatcaacccagtggtttaggagttgggttaggagctgccc |
218 |
Q |
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||||||||||| |||||||||| |||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
17395689 |
ctgacttattttcctcctccttatccacaagcagacctcgaaccaccacatcaagagggagatcaacctagtggtttaggagttgggttgggagctgccc |
17395590 |
T |
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| Q |
219 |
aagagttgaatttcaaccacagcagtttcgcaggtcataatcgaagtccatttttctcgtataattgaggcgg |
291 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17395589 |
aagagttgaatttcaaccacagcagtttcggaggtcataatcgaagtccatttttctcgtataattgaggcgg |
17395517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 17399382 - 17399103
Alignment:
| Q |
19 |
gtacctgcaaaattaccacaatagaaacaagaagaggatttcaagagagaaatttttcgacgaaagatatggaaaccctccacctgataagattcccccg |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| | ||||||| | | |
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| T |
17399382 |
gtacctgcaaaattaccataatagaaacaagaagaggatttcaagagagcaatttttcgacataagatatggaatccctccaccaaagcagattcctctg |
17399283 |
T |
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| Q |
119 |
ctgacttatttacctcctccttgt---------ccacatccagacccctaaccaccacatcaagagggagatcaacccagtggtttaggagttgggttag |
209 |
Q |
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| T |
17399282 |
atgacttattttctgcctccttgtccgcaaccaccacaacaagacccgcaactgccacatcaagagggagatcaaactagtgattaaggaactggtttac |
17399183 |
T |
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| Q |
210 |
gagctgcccaagagttgaatttcaaccacagcagtttcgcaggtcataatcgaagtccatttttctcgtataattgaggc |
289 |
Q |
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| T |
17399182 |
gtgctgcccaagagttgaatttcaatcacagcagttcagcaggtcctaatcgaagtcctttattcctgtataattgaggc |
17399103 |
T |
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