View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_66 (Length: 309)
Name: NF9461_low_66
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 46435351 - 46435070
Alignment:
| Q |
18 |
cttctttcactcacctcttctcctctccctcaacaaccgcaatctctcaccgttccccaatcattctccgccgccgtcaccaacctttcaccgccacctt |
117 |
Q |
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| T |
46435351 |
cttctttcactcacctcttctcctctccctcaacaaccgcaatctctcaccgttcctcaatcattctccgccgccgtcaccagcctttcaccgccacctt |
46435252 |
T |
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| Q |
118 |
ctccgccaaaaccactgcagcagagaccaaagaccgagtcgacaactcgaagaatcgagtccctgaccgagtcatcacacctaggtcactagacttcaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46435251 |
ctccgccaaaaccactgcagcagagaccaaagaccgagtcgacaactcgaagaatcgagtccctgaccgagtcatcacacctaggtcacaagacttcaat |
46435152 |
T |
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| Q |
218 |
gcgtggtatctcgatatcatagccaatgctgaattagccgattacggtccggttcgcggtacaatggttattcgtccctatg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46435151 |
gcgtggtatctcgatatcatagccaatgctgaattagccgattacggtccggttcgcggtacaatggttattcgtccctatg |
46435070 |
T |
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