View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_67 (Length: 308)

Name: NF9461_low_67
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_67
NF9461_low_67
[»] chr6 (2 HSPs)
chr6 (1-281)||(24796155-24796435)
chr6 (27-281)||(28629358-28629611)
[»] chr8 (2 HSPs)
chr8 (27-281)||(34536773-34537026)
chr8 (2-123)||(35507667-35507788)
[»] chr4 (5 HSPs)
chr4 (27-153)||(52715304-52715430)
chr4 (1-157)||(48089235-48089391)
chr4 (21-257)||(31836740-31836975)
chr4 (27-153)||(6076402-6076528)
chr4 (188-274)||(48089119-48089209)
[»] chr5 (1 HSPs)
chr5 (27-281)||(34196473-34196726)
[»] chr7 (1 HSPs)
chr7 (11-81)||(5031592-5031662)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 24796435 - 24796155
Alignment:
Q  1 cttcaaactatcaatatcgtcagcttcatatttagctagtcaatcggcacattcattgtcttttttcaaagtatggaaaaagaaaaccaaccaaggaaga 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||| ||||| |||||||||||||||||||||||    
T  24796435 cttcaaactatcaatatcgtcagcttcatatttagccagtcaatcggcacattcattgtctttcctcaaaatatgggaaaagaaaaccaaccaaggaaga 24796336  T
Q  101 gcatagagatttctaatgagcgaaagaacagtcgtatgaggatgaaattcattatgactgtcatctcattggtaatcaaacttaaaaccacttgagaaac 200  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||||| |||||  ||||||||||||    
T  24796335 gcatagagatttctaatgagcgaaagaatagtcgcatgaggatgaaattcattatgattgtcatctcatcggtaatcaaatttaaagtcacttgagaaac 24796236  T
Q  201 agattccaaagtaatagatcgacaaggtcccaaactagttgaagacctcacaaaatttctgaaagttcaacaaacaaatta 281  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  24796235 agattccaaagtaatagatcagcaaggtcccaaactagttgaagacctcgcaaaatttctgaaagttcaactaacaaatta 24796155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 281
Target Start/End: Complemental strand, 28629611 - 28629358
Alignment:
Q  27 catatttagctagtcaatcggcacattcattgtcttttttcaaagtatggaaaaagaaaaccaaccaaggaagagcatagagatttctaatgagcgaaag 126  Q
    |||||||||| || ||||| |||||| |||||||||   | || |||||  |||||   |||||||||||||||||| |||| || ||||| |||||||     
T  28629611 catatttagccagccaatcagcacatgcattgtcttcccttaaggtatgtgaaaaggtgaccaaccaaggaagagcagagagtttactaataagcgaaaa 28629512  T
Q  127 aacagtcgtatgaggatgaaattcattatgactgtcatctcattggtaatcaaacttaaaaccacttgagaaacagattccaaagtaatagatcga---- 222  Q
    || ||||| ||||||| |||||||||| |||  | ||||      | |||||||   ||| |  |||||||| || ||||||||||||||||||||        
T  28629511 aatagtcgcatgaggacgaaattcattctgatgggcatca-----gcaatcaaatccaaagctgcttgagaatcaaattccaaagtaatagatcgataac 28629417  T
Q  223 caaggtcccaaactagttgaagacctcacaaaatttctgaaagttcaacaaacaaatta 281  Q
    |||||||||||  |||||||||||||| ||||||| | || ||||||  ||||||||||    
T  28629416 caaggtcccaagttagttgaagacctcgcaaaattcccgagagttcagtaaacaaatta 28629358  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 281
Target Start/End: Complemental strand, 34537026 - 34536773
Alignment:
Q  27 catatttagctagtcaatcggcacattcattgtcttttttcaaagtatggaaaaagaaaaccaaccaaggaagagcatagagatttctaatgagcgaaag 126  Q
    |||||||||| |  |||||||||||||||||| |||   |||| || ||| ||||  ||||||||||||||||||||||||| ||||||||||||||||     
T  34537026 catatttagccatccaatcggcacattcattgccttccctcaaggtgtgggaaaaagaaaccaaccaaggaagagcatagagttttctaatgagcgaaat 34536927  T
Q  127 aacagtcgtatgaggatgaaattcattatgactgtcatctcattggtaatcaaacttaaaaccacttgagaaacagattccaaagtaatagatcga---- 222  Q
    || ||| | |||||||||||||||||| |||  | ||||        |||||||  |||| || ||||| || |||||||||||||||| ||||||        
T  34536926 aatagtggcatgaggatgaaattcattctgatgggcatc-----aacaatcaaatctaaagccgcttgaaaatcagattccaaagtaatggatcgataac 34536832  T
Q  223 caaggtcccaaactagttgaagacctcacaaaatttctgaaagttcaacaaacaaatta 281  Q
    ||||||||||| |||||||||||||||  |||||| | || |||||| |||||||||||    
T  34536831 caaggtcccaagctagttgaagacctcgtaaaattcccgagagttcagcaaacaaatta 34536773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 35507667 - 35507788
Alignment:
Q  2 ttcaaactatcaatatcgtcagcttcatatttagctagtcaatcggcacattcattgtcttttttcaaagtatggaaaaagaaaaccaaccaaggaagag 101  Q
    |||||| | ||||| | |||||| ||||||||||| || ||||||||||||||||||||||  |||||||| ||| ||||  ||||||||||| |||||     
T  35507667 ttcaaagtgtcaatgttgtcagcctcatatttagccagccaatcggcacattcattgtcttccttcaaagtgtgggaaaaagaaaccaaccaaagaagaa 35507766  T
Q  102 catagagatttctaatgagcga 123  Q
    ||||||| ||| |||| |||||    
T  35507767 catagagttttttaataagcga 35507788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 52715304 - 52715430
Alignment:
Q  27 catatttagctagtcaatcggcacattcattgtcttttttcaaagtatggaaaaagaaaaccaaccaaggaagagcatagagatttctaatgagcgaaag 126  Q
    |||||||||  || ||||| |||||||||||| ||| | |||| || ||| ||||  ||||||||||||||||||||||||| ||||||||||| |||||    
T  52715304 catatttagtcagccaatcagcacattcattgccttctctcaaggtgtgggaaaaagaaaccaaccaaggaagagcatagagctttctaatgagtgaaag 52715403  T
Q  127 aacagtcgtatgaggatgaaattcatt 153  Q
    || ||||| |||| |||||||||||||    
T  52715404 aatagtcgcatgaagatgaaattcatt 52715430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 48089391 - 48089235
Alignment:
Q  1 cttcaaactatcaatatcgtcagcttcatatttagctagtcaatcggcacattcattgtcttttttcaaagtatggaaaaagaaaaccaaccaaggaaga 100  Q
    ||||||| | ||||| | ||||||  |||||||| ||||||||||| ||||||||||  | ||| |||| || ||| ||||| ||||||||||||||| |    
T  48089391 cttcaaagtgtcaatgttgtcagccccatatttaactagtcaatcgacacattcattaccatttctcaaggtgtgggaaaaggaaaccaaccaaggaaca 48089292  T
Q  101 gcatagagatttctaatgagcgaaagaacagtcgtatgaggatgaaattcattatga 157  Q
     || |||  ||||||||||| |||||||  |||| |||  ||| |||||||||||||    
T  48089291 acagagaactttctaatgagagaaagaattgtcgcatggagattaaattcattatga 48089235  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 31836740 - 31836975
Alignment:
Q  21 cagcttcatatttagctagtcaatcggcacattcattgtcttttttcaaagtatggaaaaagaaaaccaaccaaggaagagcatagagatttctaatgag 120  Q
    |||| ||||||||||  |||||||||||||||| ||||| || | ||||| |  || ||| | ||| |||| ||||||||||||| |  ||| |||| ||    
T  31836740 cagcctcatatttagtaagtcaatcggcacatttattgtattctctcaaaatgcgggaaatggaaatcaacaaaggaagagcataaaactttataataag 31836839  T
Q  121 cgaaagaacagtcgtatgaggatgaaattcattatgactgtcatctcattggtaatcaaacttaaaaccacttgagaaacagattccaaagtaatagatc 220  Q
    |||||||| ||||| ||||  |||||||||||| | |  ||||||     |  |||  || | ||| |  |||||||| |||||| ||||||||||||||    
T  31836840 cgaaagaatagtcgcatgaatatgaaattcattctcatggtcatc-----gtcaatagaattcaaagctgcttgagaatcagattacaaagtaatagatc 31836934  T
Q  221 ga----caaggtcccaaactagttgaagacctcacaaaatt 257  Q
    ||    ||||||||||| ||| |||||||||||||||||||    
T  31836935 gattaccaaggtcccaagctacttgaagacctcacaaaatt 31836975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 6076528 - 6076402
Alignment:
Q  27 catatttagctagtcaatcggcacattcattgtcttttttcaaagtatggaaaaagaaaaccaaccaaggaagagcatagagatttctaatgagcgaaag 126  Q
    |||||||||| || ||||| ||| |||| ||||||| | |||| || ||| ||||| |||||||| ||  |||||   |||| ||||||||||| |||||    
T  6076528 catatttagccagccaatcagcatattcgttgtcttctctcaaggtgtgggaaaaggaaaccaactaaaaaagagtggagagctttctaatgagtgaaag 6076429  T
Q  127 aacagtcgtatgaggatgaaattcatt 153  Q
    || ||||  ||||| ||||||||||||    
T  6076428 aatagtcacatgagaatgaaattcatt 6076402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 48089209 - 48089119
Alignment:
Q  188 ccacttgagaaacagattccaaagtaatagatcga----caaggtcccaaactagttgaagacctcacaaaatttctgaaagttcaacaaa 274  Q
    ||||||||||| || ||| ||||||||||||||||    ||||||| ||| ||||||||||||||  ||||||| | || |||||| ||||    
T  48089209 ccacttgagaatcaaatttcaaagtaatagatcgataaccaaggtcacaagctagttgaagaccttgcaaaattcccgagagttcagcaaa 48089119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 281
Target Start/End: Complemental strand, 34196726 - 34196473
Alignment:
Q  27 catatttagctagtcaatcggcacattcattgtcttttttcaaagtatggaaaaagaaaaccaaccaaggaagagcatagagatttctaatgagcgaaag 126  Q
    |||||||||| |  |||||| ||||||||||| |||   |||| |||||| ||||| |||||| ||||||||||||| |||| |||| ||| ||| ||||    
T  34196726 catatttagccaaccaatcgacacattcattgccttccctcaaggtatgggaaaaggaaaccagccaaggaagagcagagagctttcgaataagcaaaag 34196627  T
Q  127 aacagtcgtatgaggatgaaattcattatgactgtcatctcattggtaatcaaacttaaaaccacttgagaaacagattccaaagtaatagatcga---- 222  Q
    || ||||  | |||||||||||||||| |||    ||||        |||||||   ||| || | |||||| || ||||||||||||||||||||        
T  34196626 aatagtcacacgaggatgaaattcattctgatgagcatc-----aacaatcaaatccaaagccgcctgagaatcatattccaaagtaatagatcgataac 34196532  T
Q  223 caaggtcccaaactagttgaagacctcacaaaatttctgaaagttcaacaaacaaatta 281  Q
    ||||||||||  ||||||||||||||| ||||||| | || ||||||||||| ||||||    
T  34196531 caaggtcccaggctagttgaagacctcgcaaaattcccgagagttcaacaaataaatta 34196473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 5031662 - 5031592
Alignment:
Q  11 tcaatatcgtcagcttcatatttagctagtcaatcggcacattcattgtcttttttcaaagtatggaaaaa 81  Q
    |||||||||| || |||||||||||| ||||||||| ||| |||||||||||  ||||| |||||| ||||    
T  5031662 tcaatatcgttagattcatatttagccagtcaatcgacactttcattgtcttccttcaatgtatgggaaaa 5031592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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