View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_69 (Length: 306)
Name: NF9461_low_69
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 44 - 298
Target Start/End: Complemental strand, 12108475 - 12108221
Alignment:
| Q |
44 |
tattgatgcacattggattaaaaaagtataatgatttaattataataactcgtaacctttttattttaatgtacattgaattctttttcttttgtcattc |
143 |
Q |
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| T |
12108475 |
tattgatgcacattggattaaaaaagtgtaatgatttaattataataactcgtaacctttttattttaatgtacattgaattctttttcttttgtcattc |
12108376 |
T |
|
| Q |
144 |
taccaaaaaataaattaattaatgtacattgaatcaaataaacgatgtccttttttgttgaaattatatatatcgacaatgcataattattaaattctaa |
243 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
12108375 |
taccaaaaaataaataaattaatgtacattgaatcaaataaacgatgtccttttttgttgaaattatatataccgacaatgcatagttattaaattctaa |
12108276 |
T |
|
| Q |
244 |
gaaaatttaaatgatattataaaagttgaccaccataaattacagttgaccacca |
298 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
12108275 |
gaaaatttaaatgatattataacagttgaccaccataaattacagttgactacca |
12108221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 29447280 - 29447251
Alignment:
| Q |
124 |
ttctttttcttttgtcattctaccaaaaaa |
153 |
Q |
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| T |
29447280 |
ttctttttcttttgtcattctaccaaaaaa |
29447251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 34423383 - 34423412
Alignment:
| Q |
124 |
ttctttttcttttgtcattctaccaaaaaa |
153 |
Q |
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|
| T |
34423383 |
ttctttttcttttgtcattctaccaaaaaa |
34423412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 152
Target Start/End: Complemental strand, 2931052 - 2931024
Alignment:
| Q |
124 |
ttctttttcttttgtcattctaccaaaaa |
152 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2931052 |
ttctttttcttttgtcattctaccaaaaa |
2931024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 43684898 - 43684927
Alignment:
| Q |
124 |
ttctttttcttttgtcattctaccaaaaaa |
153 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43684898 |
ttctttttcttttgtcattctaccaaaaaa |
43684927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 27086809 - 27086838
Alignment:
| Q |
124 |
ttctttttcttttgtcattctaccaaaaaa |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
27086809 |
ttctttttcttttgtcattctaccaaaaaa |
27086838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 22890842 - 22890810
Alignment:
| Q |
121 |
gaattctttttcttttgtcattctaccaaaaaa |
153 |
Q |
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|||||||||||||||||||||| |||||||||| |
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|
| T |
22890842 |
gaattctttttcttttgtcattttaccaaaaaa |
22890810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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