View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_70 (Length: 299)
Name: NF9461_low_70
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_70 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 1540358 - 1540092
Alignment:
| Q |
16 |
tattttgcagtcaactgacctatacccataaattcaaccaacaaatatttgctgaaaccatatgatgtacatatataggccaagttatctgtttgatagg |
115 |
Q |
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| T |
1540358 |
tattttgtagtcaactgacctatacccataaattcaaccaacaaatatttgctgaaaccatatgatgtacatatataggccaagttatctgtttgatagg |
1540259 |
T |
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| Q |
116 |
ttttgccttgttgtacttaatagtatgatggaagcatattgtacagaatcttttacctgtgcgtttaaagttgattgcatttaactttcagtttactggt |
215 |
Q |
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| T |
1540258 |
ttttgccttgttgtacttaatagtatgatggaagcatattgtacagaatcttttacctgtgcgtttaaagttgattgcatttaactttcagcttactggt |
1540159 |
T |
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| Q |
216 |
ggcacggcttcaatgcaaaaactgaaggaacgccttgagaaagacttgctagaggtataatgttact |
282 |
Q |
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| T |
1540158 |
ggcacggcttcaatgcaaaaactgaaggaacgccttgagaaagacttgctagaggtataatgttact |
1540092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 47 - 282
Target Start/End: Original strand, 23032914 - 23033145
Alignment:
| Q |
47 |
attcaaccaacaaatatttgctgaaaccatatgatgtacatatataggccaagttatctgtttgataggttttgccttgttgtacttaatagtatgatgg |
146 |
Q |
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| T |
23032914 |
attcaaccaacaaatatttgctgaaaccatatgatgtacatatataggccaagttatctgtttgataggttttgccttgctgtactgaatagcatgatgg |
23033013 |
T |
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| Q |
147 |
aagcatattgtacagaatcttttacctgtgcgtttaaagttgattgcatttaactttcagtttactggtggcacggcttcaatgcaaaaactgaaggaac |
246 |
Q |
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| T |
23033014 |
gagcatatcatacagaatcatttacctgtgtgtttaaa----attccatttcactttcagcttgctggtggcacggcttcaatgcaacaactgaaggaac |
23033109 |
T |
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| Q |
247 |
gccttgagaaagacttgctagaggtataatgttact |
282 |
Q |
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| T |
23033110 |
gccttgagaaagacttgctagaggtataatgttact |
23033145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 47 - 282
Target Start/End: Original strand, 28015707 - 28015942
Alignment:
| Q |
47 |
attcaaccaacaaatatttgctgaaaccatatgatgtacatatataggccaagttatctgtttgataggttttgccttgttgtacttaatagtatgatgg |
146 |
Q |
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| T |
28015707 |
attcaaccaacaaatatttgctgaaaccatatgatgtacatatataggccaagttatctgtttgataggttttgccttgctgtactgaatagcatgatgg |
28015806 |
T |
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| Q |
147 |
aagcatattgtacagaatcttttacctgtgcgtttaaagttgattgcatttaactttcagtttactggtggcacggcttcaatgcaaaaactgaaggaac |
246 |
Q |
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||||||| ||||||||| |||||||||| |||||||||||||| |||| |||||||| || ||||||||||||||||||||||| |||||||||||| |
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| T |
28015807 |
gagcatatcatacagaatcatttacctgtgtgtttaaagttgattctatttcactttcagcttgctggtggcacggcttcaatgcaacaactgaaggaac |
28015906 |
T |
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| Q |
247 |
gccttgagaaagacttgctagaggtataatgttact |
282 |
Q |
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| T |
28015907 |
gccttgagaaagacttgctagaggtataatgttact |
28015942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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