View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_72 (Length: 295)
Name: NF9461_low_72
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_72 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11177315 - 11177534
Alignment:
| Q |
1 |
agaaatttgaatgggggcgacattgaggcagtgccacaacgtggtagaggaagaccgaagaagtcgtcgggttcaggttcgagtttgaataacaataata |
100 |
Q |
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| T |
11177315 |
agaaatttgaatgggggcgacattgaggcagtgccgcaacgtggtagaggcagaccgaagaaggcgtcgggttcaggttcgagtttgaataataataata |
11177414 |
T |
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| Q |
101 |
atagtaatgaattctttggtccattatgggggaaacaacgcaagggttgtaaatatgaagatgaagataacaagggtgctataacattagcaactagtga |
200 |
Q |
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| T |
11177415 |
atagtaatgaattctttggtccattatgggggaaacaacgcaagggtggtaaatatgaagatgaagataacaagggtgctataacattagctactagtgg |
11177514 |
T |
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| Q |
201 |
tgaagataaggttaatgttg |
220 |
Q |
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||| |||||||||||||||| |
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| T |
11177515 |
tgatgataaggttaatgttg |
11177534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 11177580 - 11177645
Alignment:
| Q |
215 |
atgttgaaaattatgaggatg---attataatgggaagaggagagtgaggaaccagtgaaagaaag |
277 |
Q |
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| T |
11177580 |
atgttgaaaattatgaggatgatgattataatgggaagaggagagtgaggaaccagtgaaagaaag |
11177645 |
T |
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