View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_75 (Length: 287)
Name: NF9461_low_75
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 8293456 - 8293717
Alignment:
| Q |
17 |
aattttacggttctatttcctctgcttcttccagcatcatctttgagaggaaaattgagaaaatcaaagagaaaatacatcatgaaagtttgaacctgtg |
116 |
Q |
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| T |
8293456 |
aattttacggttctatttcctctgcttcttccagcatcatctttgagaggaaaattgagaaaatcaaagagaaaatacatcatgaaagtttgaacctgtg |
8293555 |
T |
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| Q |
117 |
gagctgcttacaattgattgaaactggtaaatcttatgtgtccattta-tttttctcttctcttccgtgttaatttctctgattccagatattttgttgc |
215 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8293556 |
gagctgcttacaattgactgaaactggtaaatcttatgtgtccatttattttttctcttctcttccgtgttaatttctctgattccagatattttgttgc |
8293655 |
T |
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| Q |
216 |
tgcgttttgtatagcgtccgtgtcatgtgcatttgatctccatataattaattgcatctctg |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8293656 |
tgcgttttgtatagcgtccgtgtcatgtgcatttgatctccatataattaattgcatctctg |
8293717 |
T |
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