View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_76 (Length: 281)
Name: NF9461_low_76
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 14220899 - 14220655
Alignment:
| Q |
1 |
tcagcatttgaagtgacgtgattctcaaaatccaggcagcataatatatgcataccgtggaagtttctgcgatataacaccaccacagttgatgaaactt |
100 |
Q |
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| T |
14220899 |
tcagcattagaagtgacgtgattctcaaaatccaggcagcataatatatgcataccgtggaagtttctgcgatataacaccaccacagttgatgaaactt |
14220800 |
T |
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| Q |
101 |
ggtttagcattagaagcaacaaaaagaccttacttaagttgttgtgtttaccctgtataatcagtaagagctgaacattttagagttttatagccttttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14220799 |
ggtttagcattagaagcaacaaaaagaccttacttaagttgttgtgtttaccctgtataatcagtaagagctgaacattttagagttttatagccttttt |
14220700 |
T |
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| Q |
201 |
cccctagaggtggtaatatatttgtcaaaactagcgcgcttataa |
245 |
Q |
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| T |
14220699 |
cccctagaggtgataatatatttgtcaaaactagcgcgcttataa |
14220655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 14220657 - 14220606
Alignment:
| Q |
214 |
taatatatttgtcaaaactagcgcgcttataaagtgcttatgtcgggaattt |
265 |
Q |
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| T |
14220657 |
taatatacttgtcaaaactagcgcgcttataaagtgcttatgtcgggaattt |
14220606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 41517910 - 41517994
Alignment:
| Q |
47 |
tatgcataccgtggaagtttctgcgatataacaccaccacagttgatgaaacttggtttagcattagaagcaacaaaaagacctt |
131 |
Q |
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| T |
41517910 |
tatgcatgccttggaagtttatgcaatataacaccattacagttgatagaacttggtttagcattagaagcaacaaaaatacctt |
41517994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 41536904 - 41536971
Alignment:
| Q |
62 |
agtttctgcgatataacaccaccacagttgatgaaacttggtttagcattagaagcaacaaaaagacc |
129 |
Q |
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| T |
41536904 |
agtttatgcaatttaacaccaccacagttgatagagcttggtttagcattagaagcaacaaaaagacc |
41536971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 8136797 - 8136710
Alignment:
| Q |
44 |
atatatgcataccgtggaagtttctgcgatataacaccaccacagttgatgaaacttggtttagcattagaagcaacaaaaagacctt |
131 |
Q |
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|||||||||| || ||||||||| || || ||||| ||| ||||||||| | || || |||||||||||||||||||||| ||||| |
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| T |
8136797 |
atatatgcatgccttggaagtttatgtaatttaacatcactacagttgatagagctagggttagcattagaagcaacaaaaaaacctt |
8136710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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