View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_78 (Length: 280)

Name: NF9461_low_78
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_78
NF9461_low_78
[»] chr8 (7 HSPs)
chr8 (115-262)||(15452178-15452325)
chr8 (115-229)||(31477723-31477835)
chr8 (116-214)||(11219441-11219537)
chr8 (196-262)||(1271557-1271622)
chr8 (144-209)||(35687876-35687941)
chr8 (200-240)||(3155622-3155662)
chr8 (13-49)||(15452076-15452112)
[»] scaffold0204 (2 HSPs)
scaffold0204 (115-262)||(14947-15091)
scaffold0204 (115-213)||(26337-26433)
[»] chr1 (18 HSPs)
chr1 (115-262)||(36202958-36203108)
chr1 (147-262)||(6248497-6248611)
chr1 (147-262)||(6693648-6693762)
chr1 (147-262)||(17989468-17989582)
chr1 (147-231)||(10847072-10847156)
chr1 (196-240)||(17652167-17652211)
chr1 (147-262)||(35992138-35992257)
chr1 (115-209)||(9961759-9961851)
chr1 (115-240)||(27507022-27507150)
chr1 (147-240)||(35375612-35375706)
chr1 (196-229)||(8165138-8165171)
chr1 (147-240)||(25559562-25559655)
chr1 (201-262)||(35979874-35979934)
chr1 (115-214)||(17652203-17652300)
chr1 (196-262)||(52380326-52380393)
chr1 (196-262)||(18834155-18834220)
chr1 (196-240)||(18310411-18310455)
chr1 (196-240)||(39157903-39157947)
[»] chr3 (16 HSPs)
chr3 (147-242)||(52632574-52632669)
chr3 (147-262)||(48169096-48169210)
chr3 (150-251)||(26758664-26758764)
chr3 (147-262)||(22255838-22255956)
chr3 (147-223)||(42362759-42362840)
chr3 (115-204)||(45914726-45914813)
chr3 (196-240)||(51661966-51662010)
chr3 (115-214)||(55467147-55467244)
chr3 (196-235)||(22472658-22472697)
chr3 (196-230)||(10481213-10481247)
chr3 (147-240)||(46252985-46253083)
chr3 (196-229)||(38651634-38651667)
chr3 (153-209)||(8557323-8557379)
chr3 (153-209)||(44651433-44651489)
chr3 (199-231)||(51660598-51660630)
chr3 (196-240)||(55467236-55467280)
[»] chr7 (20 HSPs)
chr7 (147-262)||(11399545-11399664)
chr7 (157-240)||(46147654-46147737)
chr7 (147-233)||(27100148-27100234)
chr7 (147-233)||(27178069-27178155)
chr7 (118-240)||(29628658-29628783)
chr7 (118-259)||(524381-524524)
chr7 (159-262)||(27456751-27456853)
chr7 (147-214)||(40849334-40849401)
chr7 (147-262)||(43202838-43202947)
chr7 (188-240)||(31011346-31011398)
chr7 (148-240)||(1812924-1813016)
chr7 (196-240)||(8568143-8568187)
chr7 (190-262)||(20335016-20335087)
chr7 (147-240)||(31287317-31287415)
chr7 (147-240)||(16496858-16496951)
chr7 (196-229)||(30079185-30079218)
chr7 (199-240)||(35495852-35495893)
chr7 (117-213)||(10338044-10338140)
chr7 (196-240)||(38903270-38903314)
chr7 (196-240)||(40849303-40849347)
[»] chr4 (17 HSPs)
chr4 (150-263)||(32222858-32222974)
chr4 (147-240)||(23625455-23625548)
chr4 (196-242)||(18536253-18536299)
chr4 (115-262)||(20986823-20986972)
chr4 (147-240)||(25686026-25686118)
chr4 (153-229)||(15724294-15724370)
chr4 (115-240)||(48292940-48293068)
chr4 (115-213)||(48338815-48338911)
chr4 (115-214)||(21069534-21069630)
chr4 (153-229)||(23119852-23119928)
chr4 (147-262)||(36106010-36106129)
chr4 (196-235)||(41325845-41325884)
chr4 (147-210)||(46471895-46471958)
chr4 (147-177)||(17845375-17845405)
chr4 (119-240)||(29233194-29233313)
chr4 (199-240)||(41260554-41260595)
chr4 (196-240)||(21069503-21069547)
[»] chr5 (13 HSPs)
chr5 (161-262)||(2423232-2423332)
chr5 (160-229)||(6595388-6595457)
chr5 (201-262)||(12378684-12378745)
chr5 (153-214)||(691156-691217)
chr5 (196-240)||(22553802-22553846)
chr5 (147-214)||(23623478-23623545)
chr5 (147-240)||(28224404-28224497)
chr5 (115-262)||(41455297-41455446)
chr5 (196-234)||(27571674-27571712)
chr5 (147-240)||(2589439-2589532)
chr5 (201-238)||(34087810-34087847)
chr5 (191-240)||(34880909-34880958)
chr5 (199-240)||(38147556-38147597)
[»] chr6 (9 HSPs)
chr6 (153-229)||(13531823-13531899)
chr6 (147-240)||(19134649-19134742)
chr6 (146-209)||(6267474-6267537)
chr6 (201-232)||(12108179-12108210)
chr6 (147-213)||(891883-891949)
chr6 (147-240)||(9686493-9686586)
chr6 (196-229)||(20501015-20501048)
chr6 (201-262)||(30752993-30753053)
chr6 (148-240)||(14564866-14564958)
[»] chr2 (11 HSPs)
chr2 (116-262)||(36500137-36500287)
chr2 (116-262)||(31719588-31719739)
chr2 (115-209)||(12041111-12041203)
chr2 (115-263)||(41166577-41166727)
chr2 (159-228)||(11678441-11678510)
chr2 (147-262)||(12884797-12884916)
chr2 (115-240)||(1331436-1331559)
chr2 (115-208)||(27301012-27301103)
chr2 (196-235)||(5862259-5862298)
chr2 (161-228)||(11695919-11695986)
chr2 (196-229)||(44085945-44085978)
[»] scaffold0688 (2 HSPs)
scaffold0688 (196-240)||(3216-3260)
scaffold0688 (199-240)||(1623-1664)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 15452178 - 15452325
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaacc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||  |||    
T  15452178 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcggttctcattttactaaccaaatcaaaccccacc 15452277  T
Q  215 gcaacataataaaaacactaagtaaaatctatatcacgtagaccaata 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15452278 gcaacataataaaaacactaagtaaaatctatatcacgtagaccaata 15452325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 31477723 - 31477835
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaacc 214  Q
    ||||||||||| ||||| | ||||||||  | || || ||||| | |||||||||||||| ||| || || ||||||||| |||| ||||||||||||||    
T  31477723 cgcatttggttcgggtgtaatcggatca--ttttcttgctcaaccacatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaacc 31477820  T
Q  215 gcaacataataaaaa 229  Q
    | ||||||| |||||    
T  31477821 gtaacataagaaaaa 31477835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 11219537 - 11219441
Alignment:
Q  116 gcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaacc 214  Q
    |||||||||| || || ||||||||||  | ||||||||||||| |||||||||||| | ||| || || | ||||||| |||| ||||||||||||||    
T  11219537 gcatttggttcggatgtattcggatca--tttttttactcaatcacatggtttggttcggtttgcggttttgattttaccaaccgaaccaaaccaaacc 11219441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 1271622 - 1271557
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaatctatatcacgtagaccaata 262  Q
    ||||||||||||||||||||||| |||| ||||||||||| | |||| || ||||| ||||||||||    
T  1271622 aaccaaaccaaaccaaaccgcaatataagaaaaacactaa-ttaaatatacatcacttagaccaata 1271557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 35687876 - 35687941
Alignment:
Q  144 atatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaacc 209  Q
    |||||||||||||| |||||| ||||||||||||| || || | |||||| ||||| |||||||||    
T  35687876 atatttttactcaaccgcatgatttggtttgatttgcgatttttattttagtaaccgaaccaaacc 35687941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 3155622 - 3155662
Alignment:
Q  200 aaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  3155622 aaaccaaaccaaaccgcaacataaaaaaaacactaattaaa 3155662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 15452076 - 15452112
Alignment:
Q  13 atggacatcatgtctcgtatgtgaaggtaagggtgtt 49  Q
    |||| ||||||||||||||||||||||||||||||||    
T  15452076 atggccatcatgtctcgtatgtgaaggtaagggtgtt 15452112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 115 - 262
Target Start/End: Complemental strand, 15091 - 14947
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaacc 214  Q
    |||||||||||||| || |||| |||||    ||||||||||| ||||| |||||||||| | | || || ||||||||| |||| ||||||||||||||    
T  15091 cgcatttggtttggatgtattcagatcac---tttttactcaaccgcatagtttggtttggtctgcggttttcattttaccaaccgaaccaaaccaaacc 14995  T
Q  215 gcaacataataaaaacactaagtaaaatctatatcacgtagaccaata 262  Q
    ||||||||||||||||| ||| |||||| ||| |||| ||||||||||    
T  14994 gcaacataataaaaacaataattaaaatttatgtcacctagaccaata 14947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 26433 - 26337
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaac 213  Q
    ||||||| |||||| || ||||||||||  |  |||| ||||| |||||||||||||||| ||| || || ||||||||| |||| |||||||||||||    
T  26433 cgcatttagtttggatgtattcggatcactt--ttttgctcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaac 26337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 36202958 - 36203108
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcatttta-----ctaaccaaaccaaacc 209  Q
    |||||||||||||| || |||||| ||| ||  |||||||||| |||||||||||||||| ||| ||  | ||||||||     | ||||| ||||||||    
T  36202958 cgcatttggtttggatgtattcggttcacat--ttttactcaaccgcatggtttggtttggtttgcggctttcattttaccaaccgaaccataccaaacc 36203055  T
Q  210 aaaccgcaacataataaaaacactaagtaaaatctatatcacgtagaccaata 262  Q
    |||||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  36203056 aaaccgcaacataataaaaacactaattaaaatctatgtcacctagaccaata 36203108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 6248611 - 6248497
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaatctat 246  Q
    ||||||| ||| |||||||||||||| | ||| || || | ||||||| |||| |||||||||||||||||| |||| ||||||||||| | |||| |||    
T  6248611 tttttacccaaccgcatggtttggttcggtttgcggttttgattttaccaaccgaaccaaaccaaaccgcaatataagaaaaacactaa-ttaaatatat 6248513  T
Q  247 atcacgtagaccaata 262  Q
    ||||| ||||||||||    
T  6248512 atcacttagaccaata 6248497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 6693648 - 6693762
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaatctat 246  Q
    |||||||||||||||||||||||||| | |||  | || | ||||||  ||||||||||||||||||||||| |||| ||||||||||| | |||| |||    
T  6693648 tttttactcaatcgcatggtttggttaggtttgtggttttaattttatcaaccaaaccaaaccaaaccgcaatataagaaaaacactaa-ttaaatatat 6693746  T
Q  247 atcacgtagaccaata 262  Q
    ||||| | ||||||||    
T  6693747 atcacttggaccaata 6693762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 17989582 - 17989468
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaatctat 246  Q
    ||||||||||| | ||| |||||||||| ||| || |  ||||||||| |||||||||| |||| |||||||||||| ||||||  ||| | ||||||||    
T  17989582 tttttactcaaccacatagtttggtttggtttacggtattcattttacgaaccaaaccataccagaccgcaacataagaaaaactttaa-ttaaatctat 17989484  T
Q  247 atcacgtagaccaata 262  Q
     |||| ||||||||||    
T  17989483 gtcacctagaccaata 17989468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 10847072 - 10847156
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaaca 231  Q
    ||||||||||| |||||| |||||||| ||||  | || | ||||||| | || ||||||||||||||||||||||| |||||||    
T  10847072 tttttactcaaccgcatgatttggtttaatttgtggtttttattttaccagcccaaccaaaccaaaccgcaacataagaaaaaca 10847156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 17652211 - 17652167
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||    
T  17652211 aaccaaaccaaaccaaaccgcaacataagaaaaacactaattaaa 17652167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 35992138 - 35992257
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaacc-----gcaacataataaaaacactaagtaaaa 241  Q
    ||||| |||||||||||||||||||||| ||| |  || || |||||| |||||||||||||||||||     ||||||||| || |||||||| | |||    
T  35992138 tttttcctcaatcgcatggtttggtttggtttgcagttttctttttaccaaccaaaccaaaccaaaccaaactgcaacataagaagaacactaa-ttaaa 35992236  T
Q  242 tctatatcacgtagaccaata 262  Q
    ||||| |||| ||||| ||||    
T  35992237 tctatgtcacctagacaaata 35992257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 9961759 - 9961851
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaacc 209  Q
    |||||||||||||| || ||||||||||  |  |||||||||| |||||| ||||||||||||| |  || ||||||||| |||||| |||||||    
T  9961759 cgcatttggtttggatgtattcggatcactt--ttttactcaaccgcatgatttggtttgatttgctgttttcattttacgaaccaagccaaacc 9961851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 27507022 - 27507150
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaac-----caaaccaaacc 209  Q
    ||||||||||| || || ||||||||||  | ||||||||||| |||||| ||||||| | ||| || || | ||||||| |||     |||||||||||    
T  27507022 cgcatttggttcggatgtattcggatca--tttttttactcaaccgcatgctttggttcggtttgcggttttgattttaccaactgaaccaaaccaaacc 27507119  T
Q  210 aaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||| |||| ||||||||||| ||||    
T  27507120 aaaccgcaatataagaaaaacactaattaaa 27507150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 35375706 - 35375612
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccg-caacataataaaaacactaagtaaa 240  Q
    ||||||||||| |||||||||| ||||| ||| || || | ||||||| |||| ||||||||||||| | |||||||| ||||||| ||| ||||    
T  35375706 tttttactcaaccgcatggttttgtttggtttgcggtttttattttaccaacctaaccaaaccaaactgccaacataagaaaaacattaattaaa 35375612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 8165138 - 8165171
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaa 229  Q
    ||||||||||||||||||||||||||||||||||    
T  8165138 aaccaaaccaaaccaaaccgcaacataataaaaa 8165171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 25559562 - 25559655
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||||| || ||||||||||| | |||  | || | ||||||| |||||||||||| |||||||||| |||| ||||||| ||| ||||    
T  25559562 tttttactcaaccgtatggtttggttcggtttgtggttttgattttaccaaccaaaccaaatcaaaccgcaatataagaaaaacaataattaaa 25559655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 35979874 - 35979934
Alignment:
Q  201 aaccaaaccaaaccgcaacataataaaaacactaagtaaaatctatatcacgtagaccaata 262  Q
    ||||||||||||||||||||||| ||||||||||| | |||||||| |||| ||||| ||||    
T  35979874 aaccaaaccaaaccgcaacataagaaaaacactaa-ttaaatctatgtcacctagacaaata 35979934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 17652300 - 17652203
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaacc 214  Q
    |||||||| ||||| || ||||||||||  |  |||| ||||| |||||||||| |||||||||  | || ||||||||| |||| ||||||||||||||    
T  17652300 cgcatttgatttggatgtattcggatcactt--ttttcctcaaccgcatggttttgtttgatttggggttttcattttaccaaccgaaccaaaccaaacc 17652203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 52380326 - 52380393
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa-atctatatcacgtagaccaata 262  Q
    ||||||||||||| ||||| ||| |||| ||||||||||| |||| || |||||||| ||||||||||    
T  52380326 aaccaaaccaaactaaaccccaatataagaaaaacactaattaaatatatatatcacctagaccaata 52380393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 18834155 - 18834220
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaatctatatcacgtagaccaata 262  Q
    ||||||| ||||||||||| |||||||| ||||||||||| | |||| ||| |||| ||||||||||    
T  18834155 aaccaaatcaaaccaaaccacaacataagaaaaacactaa-ttaaatatatgtcacctagaccaata 18834220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 18310455 - 18310411
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||||||||||||||||||||||| | ||| ||||||| ||||    
T  18310455 aaccaaaccaaaccaaaccgcaacattagaaatacactaattaaa 18310411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 39157903 - 39157947
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||||||||| ||||||||||||||| | ||||||||| ||||    
T  39157903 aaccaaaccaaatcaaaccgcaacataagataaacactaattaaa 39157947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 52632669 - 52632574
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaat 242  Q
    |||||||||||  ||||||||||||||| ||| || || | ||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||    
T  52632669 tttttactcaactgcatggtttggtttggtttgcggtttttattttaccaaccaaaccaaaccaaaccgcaacataataaaagcactaattaaaat 52632574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 48169210 - 48169096
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaatctat 246  Q
    |||||||| || | |||||||||||| | ||| || || ||||||||| |||||||||||||||||| |||| |||| ||||| ||||| |||||| |||    
T  48169210 tttttacttaaccacatggtttggttcggtttgcggttttcattttaccaaccaaaccaaaccaaacagcaatataagaaaaatactaa-taaaatatat 48169112  T
Q  247 atcacgtagaccaata 262  Q
    ||||| ||||||||||    
T  48169111 atcacttagaccaata 48169096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 26758764 - 26758664
Alignment:
Q  150 ttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaatctatatc 249  Q
    |||||||| |||||| ||||||| | ||| || || | ||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||    
T  26758764 ttactcaaccgcatgatttggttcggtttgcggttttgattttaccaaccaaaccaaaccaaaccgcaatataagaaaaacactaa-taaaatatatatc 26758666  T
Q  250 ac 251  Q
    ||    
T  26758665 ac 26758664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 22255838 - 22255956
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaacc----aaaccaaaccaaaccgcaacataataaaaacactaagtaaaat 242  Q
    ||||||||||||||||| |||||||| | ||| || || | ||||||  ||||    ||||||||||||||||| | |||| ||||||||||| | ||||    
T  22255838 tttttactcaatcgcatagtttggttcggtttgcggttttgattttatcaaccgaccaaaccaaaccaaaccgcgatataagaaaaacactaa-ttaaat 22255936  T
Q  243 ctatatcacgtagaccaata 262  Q
     |||||||||||||||||||    
T  22255937 atatatcacgtagaccaata 22255956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 42362759 - 42362840
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaac-----caaaccaaaccaaaccgcaacataa 223  Q
    ||||||||||| |||||||||||||||| ||| || || ||||||||| |||     |||||||||||||||||||||||||    
T  42362759 tttttactcaaccgcatggtttggtttggtttgcggttttcattttaccaactgaatcaaaccaaaccaaaccgcaacataa 42362840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 45914726 - 45914813
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaacc 204  Q
    ||||||||||| || || ||||||||||| |||||| |||||| |||||||||||||||| ||| || || | |||||||||||||||||    
T  45914726 cgcatttggttcggatgtattcggatcaa-tatttt-actcaaccgcatggtttggtttggtttgcggttttgattttactaaccaaacc 45914813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 51661966 - 51662010
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||| ||||||||||||||||||||||||||| ||||| ||||    
T  51661966 aaccaacccaaaccaaaccgcaacataataaaaagactaattaaa 51662010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 55467147 - 55467244
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaacc 214  Q
    |||||||||||||| || |||| |||||| |  |||||||||| || ||||||||||| | ||| |  || | |||||||||||| ||||||||||||||    
T  55467147 cgcatttggtttggatgtattcagatcaatt--ttttactcaaccgtatggtttggttcggtttgcagttttgattttactaaccgaaccaaaccaaacc 55467244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 22472658 - 22472697
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaa 235  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  22472658 aaccaaaccaaactaaaccgcaacataagaaaaacactaa 22472697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 10481213 - 10481247
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaac 230  Q
    |||||||||||||||||||||||||||| ||||||    
T  10481213 aaccaaaccaaaccaaaccgcaacataagaaaaac 10481247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 46252985 - 46253083
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaacc-----aaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||| |||| || ||||||||||| | ||| || || | ||||||||||||     ||||||||||||||||||| |||| ||||||||||| ||||    
T  46252985 tttttattcaaccgtatggtttggttcggtttgcggttttaattttactaaccgaagcaaaccaaaccaaaccgcaatataagaaaaacactaattaaa 46253083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 38651634 - 38651667
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaa 229  Q
    |||||||||||||||||||||||||||| |||||    
T  38651634 aaccaaaccaaaccaaaccgcaacataaaaaaaa 38651667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 8557323 - 8557379
Alignment:
Q  153 ctcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaacc 209  Q
    ||||| |||||||||||||||| |||  | || ||||||||| ||||||||||||||    
T  8557323 ctcaaccgcatggtttggtttggtttgtgattttcattttaccaaccaaaccaaacc 8557379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 44651489 - 44651433
Alignment:
Q  153 ctcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaacc 209  Q
    ||||| ||||||||||||||||||||  | || ||||||||| |||| |||||||||    
T  44651489 ctcaaccgcatggtttggtttgatttgtggttttcattttaccaaccgaaccaaacc 44651433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 51660598 - 51660630
Alignment:
Q  199 caaaccaaaccaaaccgcaacataataaaaaca 231  Q
    ||||||||||||||||||||||||| |||||||    
T  51660598 caaaccaaaccaaaccgcaacataagaaaaaca 51660630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 55467236 - 55467280
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||||||||||||| ||| |||| ||||||||||| ||||    
T  55467236 aaccaaaccaaaccaaacctcaatataagaaaaacactaactaaa 55467280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 11399664 - 11399545
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaac----caaaccgcaacataataaaaacactaagtaaaat 242  Q
    |||||| |||| ||||||||||| |||| ||| || || |||||||||||||| ||||||||    ||||||||| ||||||||||||||||| ||||||    
T  11399664 tttttagtcaaccgcatggtttgatttggtttgcggttttcattttactaaccgaaccaaacaaaccaaaccgcagcataataaaaacactaattaaaat 11399565  T
Q  243 ctatatcacgtagaccaata 262  Q
    |||| |||| ||||||||||    
T  11399564 ctatgtcacctagaccaata 11399545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 46147737 - 46147654
Alignment:
Q  157 atcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||||||||| |||||  || || || ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  46147737 atcgcatggtttagtttggattgcggttttcattttaccaaccaaaccaaaccaaaccgcaacataagaaaaacactaattaaa 46147654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 27100148 - 27100234
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacact 233  Q
    ||||||||||| || ||||||||||||| ||| || || | ||||||| ||||||||||||||||||||||| |||| |||||||||    
T  27100148 tttttactcaaccgtatggtttggtttggtttgcggttttgattttaccaaccaaaccaaaccaaaccgcaatataagaaaaacact 27100234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 27178155 - 27178069
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacact 233  Q
    ||||||||||| || ||||||||||||| ||| || || | ||||||| ||||||||||||||||||||||| |||| |||||||||    
T  27178155 tttttactcaaccgtatggtttggtttggtttgcggttttgattttaccaaccaaaccaaaccaaaccgcaatataagaaaaacact 27178069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 29628783 - 29628658
Alignment:
Q  118 atttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcatttta-----ctaaccaaaccaaaccaaa 212  Q
    ||||||||||| || |||||||||  |  ||||| || || |||||||||||||||| ||| || || ||||||||     | |||||||||||||||||    
T  29628783 atttggtttggatgtattcggatc--acttttttccttaaccgcatggtttggtttggtttgcgattttcattttaccaaccgaaccaaaccaaaccaaa 29628686  T
Q  213 ccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||||| ||||||||||| ||||    
T  29628685 ccgcaacataagaaaaacactaattaaa 29628658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 524381 - 524524
Alignment:
Q  118 atttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcatttta-----ctaaccaaaccaaaccaaa 212  Q
    ||||||||||| || ||||||||||  |  |||| ||||| |||||||||||||||| ||| || || ||||||||     | |||||||||||||||||    
T  524381 atttggtttggatgtattcggatcactt--ttttgctcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaa 524478  T
Q  213 ccgcaacataataaaaacactaagtaaaatctatatcacgtagacca 259  Q
    ||||||||||| |||||  |||| | |||||||| |||| |||||||    
T  524479 ccgcaacataaaaaaaattctaa-ttaaatctatgtcacctagacca 524524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 27456853 - 27456751
Alignment:
Q  159 cgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaatctatatcacgtagacc 258  Q
    ||||| ||||| |||| ||| || || ||||||| | |||| ||||||||||||||||||||||| ||||||||||| | |||||||| || | ||||||    
T  27456853 cgcatagtttgctttggtttgcggttttcattttcccaaccgaaccaaaccaaaccgcaacataagaaaaacactaa-ttaaatctatgtctcctagacc 27456755  T
Q  259 aata 262  Q
    ||||    
T  27456754 aata 27456751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 40849401 - 40849334
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaacc 214  Q
    ||||||||||| |||||||||||||||| ||| || || ||||||||| |||| ||||||||||||||    
T  40849401 tttttactcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaacc 40849334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 43202947 - 43202838
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaatctat 246  Q
    |||||||||||||||||||||||||||| |||  | || | ||||||| |||||||||||||||     |||||||||| ||||||||| | ||||||||    
T  43202947 tttttactcaatcgcatggtttggtttggtttgtggtttttattttaccaaccaaaccaaacca-----caacataatacaaacactaa-ttaaatctat 43202854  T
Q  247 atcacgtagaccaata 262  Q
     |||  ||||||||||    
T  43202853 gtcatctagaccaata 43202838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 31011346 - 31011398
Alignment:
Q  188 attttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||    
T  31011346 attttaccaaccaaacgaaaccaaaccgcaacataagaaaaacactaattaaa 31011398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 1813016 - 1812924
Alignment:
Q  148 ttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||||||| ||||| ||||||||   ||| || || | ||||||| ||||||||  ||||||||||||| |||| ||||||||||| ||||    
T  1813016 ttttactcaaccgcatagtttggttcagtttgcggttttgattttaccaaccaaacggaaccaaaccgcaatataaaaaaaacactaattaaa 1812924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 8568143 - 8568187
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||||    
T  8568143 aaccaaaccaaaccaaaccgcaatataagaaaaacactaattaaa 8568187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 20335087 - 20335016
Alignment:
Q  190 tttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaatctatatcacgtagaccaata 262  Q
    ||||| |||||||||||| |||||| ||| |||| ||||||||||| | |||| |||||||| ||||||||||    
T  20335087 tttacgaaccaaaccaaatcaaaccacaatataagaaaaacactaa-ttaaatgtatatcacctagaccaata 20335016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 31287317 - 31287415
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcatttta-----ctaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||||| |||||||||||||| | ||| || || | ||||||     | |||||||||||| |||||||||| |||| ||||||||||| ||||    
T  31287317 tttttactcaaccgcatggtttggttcggtttgcggttttaattttaccaaccgaaccaaaccaaatcaaaccgcaatataagaaaaacactaattaaa 31287415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 16496858 - 16496951
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||||| | |||||||||||||| ||| |   | | ||||||  ||||||||||||| | ||||||| |||| ||||||||||| ||||    
T  16496858 tttttactcaaccacatggtttggtttggtttgcaacttttattttatcaaccaaaccaaactagaccgcaatataagaaaaacactaattaaa 16496951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 30079185 - 30079218
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaa 229  Q
    |||||||||||||||||||||||||||| |||||    
T  30079185 aaccaaaccaaaccaaaccgcaacataagaaaaa 30079218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 35495893 - 35495852
Alignment:
Q  199 caaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||||||||||||||||| |||| ||||||||||| ||||    
T  35495893 caaaccaaaccaaaccgcaatataagaaaaacactaattaaa 35495852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 10338044 - 10338140
Alignment:
Q  117 catttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaac 213  Q
    ||||||||| || || ||||||||||  | ||||| ||||| |||||||||||||| |||||  | || | ||||||| |||| ||| |||||||||    
T  10338044 catttggttcggatgtattcggatcatttttttttgctcaaccgcatggtttggttcgatttgtggttttgattttaccaaccgaactaaaccaaac 10338140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 38903314 - 38903270
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||||||||| ||||||||||||||| ||||||| ||| ||||    
T  38903314 aaccaaaccaaatcaaaccgcaacataagaaaaacaataattaaa 38903270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 40849347 - 40849303
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||||||||||||||||||||||||| || ||| |||| ||||    
T  40849347 aaccaaaccaaaccaaaccgcaacataagaacaactctaattaaa 40849303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 32222858 - 32222974
Alignment:
Q  150 ttactcaatcgcatggtttggtttgattttcgtttctcattttactaa---ccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaatctat 246  Q
    |||||||| || ||||||||||||| ||| || || ||||||||| ||   || ||||||||||||||||||||||||||||||||||| |||||| |||    
T  32222858 ttactcaaccgtatggtttggtttggtttgcggttttcattttacaaattaccgaaccaaaccaaaccgcaacataataaaaacactaattaaaatatat 32222957  T
Q  247 atcacgtagaccaatat 263  Q
     |||| || ||||||||    
T  32222958 gtcacctataccaatat 32222974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 23625455 - 23625548
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||| |||| || || |||||||||| ||| || || | ||||||| ||||||||||||||||||||||| |||| ||||||||||| ||||    
T  23625455 tttttattcaaccgtatagtttggtttggtttgcggttttgattttaccaaccaaaccaaaccaaaccgcaatataagaaaaacactaattaaa 23625548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 18536253 - 18536299
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaat 242  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  18536253 aaccaaatcaaaccaaaccgcaacataataaaaacactaattaaaat 18536299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 262
Target Start/End: Complemental strand, 20986972 - 20986823
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaacca---- 210  Q
    ||||||||||| || || ||||||||||| |  |||||||||| ||||| |||||||||| |||  | || | |||||||||||| ||||||||||        
T  20986972 cgcatttggttcggatgtattcggatcaatt--ttttactcaaccgcattgtttggtttggtttgggattttgattttactaaccgaaccaaaccaaacc 20986875  T
Q  211 -aaccgcaacataataaaaacactaagtaaaatctatatcacgtagaccaata 262  Q
     |||||||| |||| ||||||||||| | |||| |||||||| | ||||||||    
T  20986874 aaaccgcaatataagaaaaacactaa-ttaaatatatatcacttggaccaata 20986823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 25686026 - 25686118
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||||| | |||||||||||||| ||| || || | ||||||| ||||||||||||||||   ||||||||| ||||||||||| ||||    
T  25686026 tttttactcaaccacatggtttggtttggtttgcggtttttattttac-aaccaaaccaaaccaagttgcaacataagaaaaacactaattaaa 25686118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 15724370 - 15724294
Alignment:
Q  153 ctcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaa 229  Q
    ||||| |||||||||||||||| ||| |  || | ||||||| |||| ||||||||||||||||||||||| |||||    
T  15724370 ctcaaccgcatggtttggtttggtttgcaatttttattttaccaaccgaaccaaaccaaaccgcaacataagaaaaa 15724294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 48292940 - 48293068
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcatttta-----ctaaccaaaccaaacc 209  Q
    |||||||||||||| || ||||||||||  |  |||| ||||| | |||||||||||||| ||| || || ||||||||     | || |||||||||||    
T  48292940 cgcatttggtttggatgtattcggatcactt--ttttcctcaaccacatggtttggtttggtttgcggttttcattttacctacccaaacaaaccaaacc 48293037  T
Q  210 aaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||| |||| ||||||||||| ||||    
T  48293038 aaaccgcaagataagaaaaacactaattaaa 48293068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 48338911 - 48338815
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaac 213  Q
    ||||||| |||||| || ||||||||||  |  |||| ||||| |||||||||||||||| ||| || || ||||||||| |||| |||||||||||||    
T  48338911 cgcatttagtttggatgtattcggatcactt--ttttgctcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaac 48338815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 21069630 - 21069534
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaacc 214  Q
    ||||||| |||||| || ||||||||||| |  |||||||||| |||||||||| ||| | ||| ||||| | ||||||| |||| ||||||||||||||    
T  21069630 cgcatttagtttggatgtattcggatcaatt--ttttactcaaccgcatggttttgttcggtttgcgttt-tgattttaccaaccgaaccaaaccaaacc 21069534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 23119852 - 23119928
Alignment:
Q  153 ctcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaa 229  Q
    ||||| |||||| ||||||| | ||| || || ||||||||| |||| ||| ||||||||||||||||||| |||||    
T  23119852 ctcaaccgcatgatttggttcggtttgcgattttcattttaccaaccgaactaaaccaaaccgcaacataagaaaaa 23119928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 36106010 - 36106129
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcatttta-----ctaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaa 241  Q
    ||||||||||| ||||||||||| |||| ||| || ||  |||||||     | ||||| |||||||||||||||||||||  |||||| |||| | |||    
T  36106010 tttttactcaaccgcatggtttgctttgctttgcggtttccattttaccaaccgaaccagaccaaaccaaaccgcaacataggaaaaactctaa-ttaaa 36106108  T
Q  242 tctatatcacgtagaccaata 262  Q
    ||||| |||| ||||||||||    
T  36106109 tctatgtcacctagaccaata 36106129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 41325884 - 41325845
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaa 235  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  41325884 aaccaaaccaaaccaaaccgcaatataagaaaaacactaa 41325845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 46471958 - 46471895
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaacca 210  Q
    ||||||||||| |||||| ||||||||| ||| || || ||||||||  |||||||||||||||    
T  46471958 tttttactcaaccgcatgatttggtttggtttgcggttttcattttatgaaccaaaccaaacca 46471895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 177
Target Start/End: Complemental strand, 17845405 - 17845375
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgatt 177  Q
    |||||||||||||||||||||||||||||||    
T  17845405 tttttactcaatcgcatggtttggtttgatt 17845375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 29233313 - 29233194
Alignment:
Q  119 tttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaa 218  Q
    |||||||||| || ||||||||||| | | ||  ||||| |||||||||||||| | |||  | || | ||||||| |||| |||||||| ||||| |||    
T  29233313 tttggtttggatgtattcggatcaattttctt--ctcaaccgcatggtttggttcggtttgtggttttaattttaccaaccgaaccaaacaaaaccccaa 29233216  T
Q  219 cataataaaaacactaagtaaa 240  Q
     |||| ||||||||||| ||||    
T  29233215 tataagaaaaacactaattaaa 29233194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 41260595 - 41260554
Alignment:
Q  199 caaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||    
T  41260595 caaaccaaaccaaactgcaacataagaaaaacactaattaaa 41260554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 21069547 - 21069503
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||||||||||||||| | |||| ||||||||||| ||||    
T  21069547 aaccaaaccaaaccaaaccgcgatataagaaaaacactaattaaa 21069503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 2423332 - 2423232
Alignment:
Q  161 catggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaaatctatatcacgtagaccaa 260  Q
    |||||||||||||||||| || || ||||||||| |||| ||||||||||||||||||||||| ||||||| ||| | |||||||| |||| ||||| ||    
T  2423332 catggtttggtttgatttgcggttttcattttaccaaccgaaccaaaccaaaccgcaacataagaaaaacattaa-ttaaatctatgtcacctagacaaa 2423234  T
Q  261 ta 262  Q
    ||    
T  2423233 ta 2423232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 6595457 - 6595388
Alignment:
Q  160 gcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaa 229  Q
    ||||||||||||||| ||| || || ||||||||| |||||||||||||||||||||||||||| |||||    
T  6595457 gcatggtttggtttggtttgcggttttcattttaccaaccaaaccaaaccaaaccgcaacataagaaaaa 6595388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 12378684 - 12378745
Alignment:
Q  201 aaccaaaccaaaccgcaacataataaaaacactaagtaaaatctatatcacgtagaccaata 262  Q
    |||||||||||||| |||||||||||||||||||| || ||||||| |||| ||||||||||    
T  12378684 aaccaaaccaaaccacaacataataaaaacactaattagaatctatttcacctagaccaata 12378745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 691156 - 691217
Alignment:
Q  153 ctcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaacc 214  Q
    ||||| |||||||||||||||||||| || || ||||||||| |||| ||||||||||||||    
T  691156 ctcaaccgcatggtttggtttgatttgcggttttcattttaccaaccgaaccaaaccaaacc 691217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 22553846 - 22553802
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||    
T  22553846 aaccaaaccaaaccaaaccgcaacataagaaaaacactaattaaa 22553802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 23623545 - 23623478
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaacc 214  Q
    ||||||||||| |||||||||||||||| ||| || || |||||| || |||| ||||||||||||||    
T  23623545 tttttactcaaccgcatggtttggtttggtttgcggttttcatttgacaaaccgaaccaaaccaaacc 23623478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 28224404 - 28224497
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||||||||  |||| |||||||||| ||| || || | ||||||| |||| ||||||||||||| |||| |||| |||| |||||| ||||    
T  28224404 tttttactcaactgcatagtttggtttggtttgcggttttgattttaccaaccgaaccaaaccaaactgcaatataagaaaaccactaattaaa 28224497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 262
Target Start/End: Complemental strand, 41455446 - 41455297
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaacca---- 210  Q
    ||||||||||| || || |||| |||||| |  |||||||||| | |||||||||||| ||||| || || | ||||||| |||| ||||||||||        
T  41455446 cgcatttggttcggatgtattctgatcaatt--ttttactcaaccacatggtttggttcgatttgcggttatgattttaccaaccgaaccaaaccaaatc 41455349  T
Q  211 -aaccgcaacataataaaaacactaagtaaaatctatatcacgtagaccaata 262  Q
     |||||||| |||| ||||||||||| | |||| |||||||| | ||||||||    
T  41455348 gaaccgcaatataagaaaaacactaa-ttaaatatatatcacttggaccaata 41455297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 27571674 - 27571712
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacacta 234  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  27571674 aaccaaaccaaaccaaaccgcaagataagaaaaacacta 27571712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 2589532 - 2589439
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||| | |||||||||||||| | ||| |  || | ||||||| |||  |||| || ||||||||||||||| ||||||||||| ||||    
T  2589532 tttttactctaccgcatggtttggttcggtttccagtttttattttaccaactgaaccgaatcaaaccgcaacataagaaaaacactaattaaa 2589439  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 34087847 - 34087810
Alignment:
Q  201 aaccaaaccaaaccgcaacataataaaaacactaagta 238  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  34087847 aaccaaaccaaaccgcaatataagaaaaacactaagta 34087810  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 34880909 - 34880958
Alignment:
Q  191 ttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||| |||||||||||| ||||||||||||||| ||||||| ||| ||||    
T  34880909 ttacaaaccaaaccaaatcaaaccgcaacataagaaaaacattaattaaa 34880958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 38147597 - 38147556
Alignment:
Q  199 caaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||||||||||||| |||||||| ||||||||||| ||||    
T  38147597 caaaccaaaccaaaccccaacataagaaaaacactaattaaa 38147556  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 13531823 - 13531899
Alignment:
Q  153 ctcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaa 229  Q
    ||||| |||||||||||||||| ||| || || ||||||||| |||||||||||||||||||||||||||| |||||    
T  13531823 ctcaaccgcatggtttggtttggtttgcgattttcattttaccaaccaaaccaaaccaaaccgcaacataagaaaaa 13531899  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 19134649 - 19134742
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||| ||||| || ||||||||||||| ||| |  || ||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||    
T  19134649 ttttttctcaaccgtatggtttggtttggtttgcagttttcattttaccaaccgaaccaaaccaaaccgcaacataagaaaaacactaattaaa 19134742  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 6267537 - 6267474
Alignment:
Q  146 atttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaacc 209  Q
    |||||||||||| |||||||||||||||| ||| || || | ||||||  ||||||||||||||    
T  6267537 atttttactcaaccgcatggtttggtttggtttgcggtttttattttaaaaaccaaaccaaacc 6267474  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 232
Target Start/End: Original strand, 12108179 - 12108210
Alignment:
Q  201 aaccaaaccaaaccgcaacataataaaaacac 232  Q
    ||||||||||||||||||||||||||||||||    
T  12108179 aaccaaaccaaaccgcaacataataaaaacac 12108210  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 891883 - 891949
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaac 213  Q
    |||||||| || |||||||||||||||| ||| || || ||||||||| |||| ||||||| |||||    
T  891883 tttttactaaaccgcatggtttggtttggtttgcgcttttcattttacgaaccgaaccaaatcaaac 891949  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 9686586 - 9686493
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||||| ||||||||||| || |  || || || | ||||||| |||| ||||||||||||| ||||  ||| ||||||||||| ||||    
T  9686586 tttttactcaaccgcatggtttgattcggattgcggttttgattttaccaaccgaaccaaaccaaactgcaatgtaagaaaaacactaattaaa 9686493  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 20501048 - 20501015
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaa 229  Q
    |||||||||||||||||||||||||||| |||||    
T  20501048 aaccaaaccaaaccaaaccgcaacataaaaaaaa 20501015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 30753053 - 30752993
Alignment:
Q  201 aaccaaaccaaaccgcaacataataaaaacactaagtaaaatctatatcacgtagaccaata 262  Q
    |||| |||||||||||||||||| ||||||| ||| | ||||||||||||| || |||||||    
T  30753053 aaccgaaccaaaccgcaacataagaaaaacattaact-aaatctatatcacataaaccaata 30752993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 14564958 - 14564866
Alignment:
Q  148 ttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||||  ||||||||||||||  ||| |  || | ||| ||| |||| ||||||||||||  ||||||||| ||||||||||| ||||    
T  14564958 ttttactcaactgcatggtttggtttagtttgcagtttttattatacgaaccgaaccaaaccaaattgcaacataagaaaaacactaattaaa 14564866  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 262
Target Start/End: Original strand, 36500137 - 36500287
Alignment:
Q  116 gcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcatttta------ctaaccaaaccaaacc 209  Q
    |||||| |||||| || ||||||||||  | ||||||||||| ||||| |||||||||| |||||| || | ||||||      | |||||||||||| |    
T  36500137 gcattttgtttggatgtattcggatca--tttttttactcaaccgcatagtttggtttggttttcggtttttattttaccaacccgaaccaaaccaaatc 36500234  T
Q  210 aaaccgcaacataataaaaacactaagtaaaatctatatcacgtagaccaata 262  Q
    |||||||||||||  ||||||||||| ||||||| || |||| ||||| ||||    
T  36500235 aaaccgcaacatagcaaaaacactaattaaaatcgatgtcacctagactaata 36500287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 262
Target Start/End: Original strand, 31719588 - 31719739
Alignment:
Q  116 gcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgt-ttctcattttactaacc-----aaaccaaacc 209  Q
    ||||||||||||| || |||| |||||  | ||||||||| |  |||||||||| |||| ||| ||| || ||||||||||||||     |||||||| |    
T  31719588 gcatttggtttggatgtattctgatcactt-tttttactctactgcatggtttgatttggtttgcgtgttttcattttactaaccgaaccaaaccaaatc 31719686  T
Q  210 aaaccgcaacataataaaaacactaagtaaaatctatatcacgtagaccaata 262  Q
    ||||||||||||||||||| |||||| |||||| ||| | || ||||||||||    
T  31719687 aaaccgcaacataataaaaccactaattaaaatatatgttacctagaccaata 31719739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 12041111 - 12041203
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaacc 209  Q
    |||||||||||||| || ||||||||||  |  |||||||||| ||||| |||||||||| ||| || || ||||||||| ||||||||||||||    
T  12041111 cgcatttggtttggatgtattcggatcactt--ttttactcaaccgcatagtttggtttggtttgcggttttcattttaccaaccaaaccaaacc 12041203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 263
Target Start/End: Complemental strand, 41166727 - 41166577
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaacca---- 210  Q
    |||||||||||||| ||||||| |||||  |  ||| |||||| ||||||||||| |||| ||| || || ||||||||| |||| ||||||||||        
T  41166727 cgcatttggtttggatgcattcagatcactt--tttcactcaaccgcatggtttgatttggtttgcggttttcattttaccaaccgaaccaaaccaaacc 41166630  T
Q  211 -aaccgcaacataataaaaacactaagtaaaatctatatcacgtagaccaatat 263  Q
     |||| ||||||||||||| |||||| | |||| ||| |||| |||||||||||    
T  41166629 aaaccacaacataataaaagcactaa-ttaaatttatgtcacctagaccaatat 41166577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 11678510 - 11678441
Alignment:
Q  159 cgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaa 228  Q
    |||||||||||||||| ||| || || | ||||||| ||||||||||||||||||||||| |||| ||||    
T  11678510 cgcatggtttggtttggtttgcggttttgattttaccaaccaaaccaaaccaaaccgcaatataagaaaa 11678441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 12884916 - 12884797
Alignment:
Q  147 tttttactcaatcgcatggtttggtttgattttcgtttctcattttactaac-----caaaccaaaccaaaccgcaacataataaaaacactaagtaaaa 241  Q
    |||||||||||||||||||||||||| | |||  | || | ||||||| |||     |||||||||||||||||||| |||  ||||||||||| | |||    
T  12884916 tttttactcaatcgcatggtttggttcggtttggggttttgattttaccaactgaaccaaaccaaaccaaaccgcaatatatgaaaaacactaa-ttaaa 12884818  T
Q  242 tctatatcacgtagaccaata 262  Q
    | |||||||| ||||||||||    
T  12884817 tatatatcacctagaccaata 12884797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 1331559 - 1331436
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaacc 214  Q
    |||||||| ||||| || ||||||||||  |  |||| ||||| | |||||||||||||| ||| |  || | ||||||  |||  ||||||||||||||    
T  1331559 cgcatttgatttggatgtattcggatcactt--ttttcctcaaccacatggtttggtttggtttgccgtttttattttatcaactgaaccaaaccaaacc 1331462  T
Q  215 gcaacataataaaaacactaagtaaa 240  Q
    ||||||||| ||||||||||| ||||    
T  1331461 gcaacataagaaaaacactaattaaa 1331436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 27301012 - 27301103
Alignment:
Q  115 cgcatttggtttgggtgcattcggatcaaatatttttactcaatcgcatggtttggtttgattttcgtttctcattttactaaccaaaccaaac 208  Q
    |||||||| ||||| || ||||||||||  |  |||| ||||| |||||||||||||||| ||| || || ||||||||| |||||||||||||    
T  27301012 cgcatttgatttggatgtattcggatcactt--ttttcctcaaccgcatggtttggtttggtttgcggttttcattttacaaaccaaaccaaac 27301103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 5862259 - 5862298
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaa 235  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  5862259 aaccaaaccaaaccaaaccgcaatataagaaaaacactaa 5862298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 11695986 - 11695919
Alignment:
Q  161 catggtttggtttgattttcgtttctcattttactaaccaaaccaaaccaaaccgcaacataataaaa 228  Q
    |||||||||||| | ||| || || | ||||||| ||||||||||||||||||||||| |||| ||||    
T  11695986 catggtttggttcggtttgcggttttgattttaccaaccaaaccaaaccaaaccgcaatataagaaaa 11695919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 44085978 - 44085945
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaa 229  Q
    |||||||||||||||||||||||||||| |||||    
T  44085978 aaccaaaccaaaccaaaccgcaacataagaaaaa 44085945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 3260 - 3216
Alignment:
Q  196 aaccaaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||||    
T  3260 aaccaaaccaaaccaaaccacaacataagaaaaacactaattaaa 3216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 1664 - 1623
Alignment:
Q  199 caaaccaaaccaaaccgcaacataataaaaacactaagtaaa 240  Q
    |||||||||||||||| |||||||| ||||||||||| ||||    
T  1664 caaaccaaaccaaaccacaacataagaaaaacactaattaaa 1623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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