View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_79 (Length: 279)

Name: NF9461_low_79
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_79
NF9461_low_79
[»] chr8 (11 HSPs)
chr8 (17-269)||(10201865-10202117)
chr8 (17-269)||(10208938-10209190)
chr8 (201-265)||(1963531-1963595)
chr8 (198-266)||(894467-894535)
chr8 (198-265)||(1965198-1965265)
chr8 (214-265)||(2436956-2437007)
chr8 (198-266)||(906108-906176)
chr8 (197-265)||(1969139-1969207)
chr8 (218-265)||(2004434-2004481)
chr8 (222-265)||(2018217-2018260)
chr8 (219-265)||(2007814-2007860)
[»] chr6 (3 HSPs)
chr6 (198-253)||(8294432-8294487)
chr6 (198-259)||(844998-845059)
chr6 (198-259)||(870282-870343)
[»] chr7 (1 HSPs)
chr7 (199-244)||(26278395-26278440)
[»] chr5 (1 HSPs)
chr5 (199-232)||(5994891-5994924)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 10202117 - 10201865
Alignment:
Q  17 acaaaggttcttgtgggttttaaggtgtcctaaggataaagttgaaaatgattctaattttattgctaatagtaatgttgacccttttgaatttttacca 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10202117 acaaaggttcttgtgggttttaaggtgtccaaaggataaagttgaaaatgattctaattttattgctaatagtaatgttgacccttttgaatttttacca 10202018  T
Q  117 aatggttacatagagaggactgaagggaagggtttagtgctcccatattgggccccacaagcacaagttttaagccatatctcaattggagggtttgtga 216  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  10202017 aatggttacatagagaggactaaagggaagggtttagtgctcccatattgggccccacaagcacaagttttgagtcatatctcaattggagggtttgtga 10201918  T
Q  217 gtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttg 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10201917 gtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttg 10201865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 10209190 - 10208938
Alignment:
Q  17 acaaaggttcttgtgggttttaaggtgtcctaaggataaagttgaaaatgattctaattttattgctaatagtaatgttgacccttttgaatttttacca 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10209190 acaaagatttttgtgggttttaaggtgtcctaaggataaagttgaaaatgattctaattttattgctaatagtaatgttgacccttttgaatttttacca 10209091  T
Q  117 aatggttacatagagaggactgaagggaagggtttagtgctcccatattgggccccacaagcacaagttttaagccatatctcaattggagggtttgtga 216  Q
    |||||||  | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  10209090 aatggttttacagagaggactaaagggaagggtttagtgctcccatattgggccccacaagcacaagttttgagtcatatctcaattggagggtttgtga 10208991  T
Q  217 gtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttg 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10208990 gtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttg 10208938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 1963531 - 1963595
Alignment:
Q  201 attggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 265  Q
    ||||| |||||| ||  ||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  1963531 attggtgggtttttgtctcattgtggttggaattcaacccttgagagtgtggtgtatggtgtgcc 1963595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 894535 - 894467
Alignment:
Q  198 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcct 266  Q
    |||||||| || ||| |||||||||||||||||  ||||||| | ||||||||||| ||||||||||||    
T  894535 tcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcct 894467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 1965198 - 1965265
Alignment:
Q  198 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 265  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| ||||| ||||||||| |||| |||||    
T  1965198 tcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgcc 1965265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 2436956 - 2437007
Alignment:
Q  214 tgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 265  Q
    ||||||| ||||| ||||||||||| ||||||||||||||| ||||||||||    
T  2436956 tgagtcactgtggctggaattcaacccttgagagtgtggtgcatggtgtgcc 2437007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 906108 - 906176
Alignment:
Q  198 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcct 266  Q
    |||||||| |||||| |||||||||||||||||  ||||||| | |||| |||||| ||||| ||||||    
T  906108 tcaattggtgggtttttgagtcattgtggttggggttcaactttggagactgtggttaatggggtgcct 906176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 1969139 - 1969207
Alignment:
Q  197 ctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 265  Q
    ||||||||| || ||  ||| ||||||||| ||||||||||| |||||||||||| || ||||||||||    
T  1969139 ctcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgcc 1969207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 265
Target Start/End: Complemental strand, 2004481 - 2004434
Alignment:
Q  218 tcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 265  Q
    ||||||||| ||||||||||| || |||||||||||| ||||||||||    
T  2004481 tcattgtggctggaattcaaccctagagagtgtggtgcatggtgtgcc 2004434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 2018260 - 2018217
Alignment:
Q  222 tgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 265  Q
    ||||||||||||||||| |||||||||||| || ||||||||||    
T  2018260 tgtggttggaattcaacgcttgagagtgtgttgcatggtgtgcc 2018217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 2007860 - 2007814
Alignment:
Q  219 cattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 265  Q
    |||||||| ||||||||||| ||||||||||||||| | ||||||||    
T  2007860 cattgtggctggaattcaacccttgagagtgtggtgcacggtgtgcc 2007814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 8294487 - 8294432
Alignment:
Q  198 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggt 253  Q
    |||||||| |||||| | |||||||||||||||| ||||||| | |||||||||||    
T  8294487 tcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggt 8294432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 845059 - 844998
Alignment:
Q  198 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatgg 259  Q
    |||||||| |||||| | | ||||||||||||||||||||| ||||| ||||| || |||||    
T  845059 tcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatgg 844998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 870343 - 870282
Alignment:
Q  198 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatgg 259  Q
    |||||||| |||||| | | ||||||||||||||||||||| ||||| ||||| || |||||    
T  870343 tcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatgg 870282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 26278395 - 26278440
Alignment:
Q  199 caattggagggtttgtgagtcattgtggttggaattcaactcttga 244  Q
    |||| |||||| |||||| ||||||||||||||| |||||||||||    
T  26278395 caatcggagggattgtgactcattgtggttggaactcaactcttga 26278440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 5994924 - 5994891
Alignment:
Q  199 caattggagggtttgtgagtcattgtggttggaa 232  Q
    ||||||||||||| ||||||||||||||||||||    
T  5994924 caattggagggttagtgagtcattgtggttggaa 5994891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University