View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9461_low_8 (Length: 594)
Name: NF9461_low_8
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 231 - 574
Target Start/End: Original strand, 49758174 - 49758516
Alignment:
| Q |
231 |
cttgacttgttttgaatcaaattagatatatatatcagatgagatttatatacgtctggcagcaaaataagcagcactcgccggtcaagggaagaagatg |
330 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49758174 |
cttgacttgttttggatcaaattagatatatatatcagatgagatttatatacgtctggcagcaaaataagcagcactcgccggtcaagggaagaagatg |
49758273 |
T |
|
| Q |
331 |
caattttttgtaatatttgtagtataacgtcatatttaccaacttattattgtgaaatgcagttctatttttattgggtaaacacttattgagattgtct |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
49758274 |
caattttttgtaatatttgtagtataacgtcatatttaccaacttattattgtgaaatgcagttctatttttattgggtaaacactttttgagattgtct |
49758373 |
T |
|
| Q |
431 |
aaacctcaattgtcttggccattaattcagaatagataatttcgttgattcatttactttaccccctcctaaggcatggtacacgcaaactgaattgagt |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49758374 |
aaacctcaattgtcttggccattaattcagaatagataatttcgttgattcatttacttta-cccctcctaaggcatggtacacgcaaactgaattgagt |
49758472 |
T |
|
| Q |
531 |
agacaaccattttctgctggccaaaatagagtatatgtttcagg |
574 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
49758473 |
agacaacctttttctgctggcgaaaatagagtatatgtttcagg |
49758516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 49757944 - 49758110
Alignment:
| Q |
1 |
tccacataagagaaagccagacatctccaaagcaaaagagcttcttggctggcaaccatctgtgtccctccgtgagggacttcctctaatggtcgctgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49757944 |
tccacataagagaaagccagacatctccaaagcaaaagagcttcttggctggcaaccatctgtgtccctccgtgagggacttcctctaatggtcgctgat |
49758043 |
T |
|
| Q |
101 |
ttcaagcaaagattatttggtgatggggacaaaggtgcagctgcagcataggtcagtacagctgtgg |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49758044 |
ttcaagcaaagattatttggtgatggggacaaaggtgcagctgcagcataggtcagtacagctgtgg |
49758110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University