View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9461_low_81 (Length: 277)
Name: NF9461_low_81
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_81 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 30 - 268
Target Start/End: Complemental strand, 34732267 - 34732031
Alignment:
| Q |
30 |
tgcatcagtcatctctttcgttctcaattctccgcccgctttccgctcctttttctcgttttcggttctgtaattctttcgtttttaattctttatagaa |
129 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34732267 |
tgcatcagtcatctctttcattctcaa--ctccacccgctttccgctcctttttctcgtttccggttctgtaattctttcgtttttaattctttatagaa |
34732170 |
T |
|
| Q |
130 |
gccattacttctttgattcatccatctagaatctatgttaattgtatagctcttgatatatttatttcctagttgttaattttgtagcttttttgtccac |
229 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| ||||| |||||||||| | |
|
|
| T |
34732169 |
gccattatttctttgatccatccatctagaatctatgttaattgtatagctcttaatttatttatttcctagtttttaatattgtaccttttttgtcaat |
34732070 |
T |
|
| Q |
230 |
tagcagagcaagcctatcaaatgctccttgatgtccatc |
268 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
34732069 |
tagcagagcaagcctatcaaattctccttgatttccatc |
34732031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 32491530 - 32491289
Alignment:
| Q |
19 |
tttctaatttttgcatcagtcatctctttcgttctcaattctccgcccgctttccgctcctttttctcgttttcggttctgtaattctttcgtttttaat |
118 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| |||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32491530 |
tttctaatttttgcaccactcatctctttcgttctcat-----cgcc---tttctgctcctttttctcgtttctggttctgtaattctttcgtttttaat |
32491439 |
T |
|
| Q |
119 |
tctttatagaagccattacttctttgattcatccatctagaatctatgttaattgtatagctcttgatatatttatttcctagttgttaattttgtagct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||||| |
|
|
| T |
32491438 |
tctttatagaagccattacttctttgattcatccatctagaatctatgttaattgtacagctcttaatttatttattttctagttgttaattttgtagct |
32491339 |
T |
|
| Q |
219 |
tttttgtccactagcagagcaagcctatcaaatgctccttgatgtccatc |
268 |
Q |
| |
|
|||||| ||| || |||||||||||||| ||| ||||||||| |||||| |
|
|
| T |
32491338 |
tttttgcccattaacagagcaagcctattgaattctccttgatttccatc |
32491289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 40054046 - 40054113
Alignment:
| Q |
117 |
attctttatagaagccattacttctttgattcatccatctagaatctatgttaattgtatagctcttg |
184 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40054046 |
attctttatagaagcaattacttctctgattcatccatctagaatctatgttgattgtatagctcttg |
40054113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University