View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_83 (Length: 276)
Name: NF9461_low_83
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_83 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 35490655 - 35490427
Alignment:
| Q |
1 |
caaggccaactcaaagaggttccatcactatatttttaaatggaaatcatcaatacaacgaaatcaaaatcacgagattgtcccgaaggannnnnnngtc |
100 |
Q |
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| T |
35490655 |
caagaccaactcaaagaggttccattactatatttttaaatggaaatgattaatacaacgaaatcaaaatcacgagattgtccggaaggatttttttgtc |
35490556 |
T |
|
| Q |
101 |
ac--tatatttgaaatttgaccaaaactcttaccccacaactgcccgtgttttccggccatgagaagattgtaacggtgaatagtaattcgggatgcatt |
198 |
Q |
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| T |
35490555 |
actatatatttgaaatttgaccaaaactcttaccccacaactgcccatgttttccggccatgagaagattgtcatggtgaacagtaattcaggatgcatt |
35490456 |
T |
|
| Q |
199 |
cgctataaaaacctttgcggtaaataaca |
227 |
Q |
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||||||||||||||| ||| ||||||||| |
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| T |
35490455 |
cgctataaaaaccttcgcgttaaataaca |
35490427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 234
Target Start/End: Original strand, 7417766 - 7417898
Alignment:
| Q |
103 |
tatatttgaaatttgaccaaaactcttaccccacaactgcccgtgttttccggccatgagaagattgtaacggtgaatagt-aattcgggatgcattcgc |
201 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||||| ||| | |||||||||||||| | |
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| T |
7417766 |
tatatttgaaatttgaccaaaacttttaccccacaactgcccatgttttccggccatgagaacattgtattggtgaacagtgatttcgggatgcattcac |
7417865 |
T |
|
| Q |
202 |
tataaaaacctttgcggtaaataacactgctca |
234 |
Q |
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||| | |||| |||||||||| ||| ||||| |
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| T |
7417866 |
gttaatatccttcgcggtaaatagcaccgctca |
7417898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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