View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_84 (Length: 274)
Name: NF9461_low_84
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_84 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 43509852 - 43510053
Alignment:
| Q |
7 |
ggatggaacattttttctccttccc----ataatgctatttcaagcgaaacaaaagctcaagaaggcctcgcgaattgattgctaccaccagatctcact |
102 |
Q |
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| T |
43509852 |
ggatggaacattttttctccttcccgtatataatgctatttcaagcgaaacaaaagctcacgaaggcctcgcgaattgattgctaccaccagatctcact |
43509951 |
T |
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| Q |
103 |
tggtgcaaatcatgaaccgttggataaaaggaagtgaaatactgcagtgacaaggataaaggctcgtgatattttcactttgtaatttgccgctcgaagt |
202 |
Q |
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| T |
43509952 |
tggtgcaaatcatgaaccgttggataaaaggaagggagatactgcagttaccaggat-aaggctcgtgatattttcactttgtaatttgccgctcgaagt |
43510050 |
T |
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| Q |
203 |
agc |
205 |
Q |
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||| |
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| T |
43510051 |
agc |
43510053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 43510074 - 43510118
Alignment:
| Q |
219 |
attataacatgatgaatgtaactcgttgaaaatagaaactttacc |
263 |
Q |
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| T |
43510074 |
attataacatgatgaatgtaactcgttgaaaatagaaactttacc |
43510118 |
T |
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