View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9461_low_85 (Length: 273)
Name: NF9461_low_85
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_85 |
 | |
|
| [»] scaffold0459 (1 HSPs) |
| | |
|
| [»] scaffold0366 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0459 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 4977 - 4731
Alignment:
| Q |
14 |
caaaggaaataggtaatgctgaaatattagatgagttaaccactaacagaggggagttgaaggtcagaactat----gagctttagtgaggaaagaaata |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4977 |
caaaggaaataggtaatgctgaaatattagatgagttaaccactaacagaggggagttgaaggtcagaactatatatgagctttagtgaggaaagaaata |
4878 |
T |
|
| Q |
110 |
atcaggtaaccataattcaaatgttgtttctttggatgaatttgagtcaaatagttttattctttctctaaagagatgcatcgtttttaatgatgagttt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4877 |
atcaggtaaccataattcaaatgttgtttctttggatgaatttgagttaaatagttttattctttctctaaagagatgcatcgtttttaatgatgagttt |
4778 |
T |
|
| Q |
210 |
ttgcaggtttatcctcataaacttgattcaaactagaatgtgatatt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4777 |
ttgcaggtttatcctcataaacttgattcaaactagaatgtgatatt |
4731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 4977 - 4731
Alignment:
| Q |
14 |
caaaggaaataggtaatgctgaaatattagatgagttaaccactaacagaggggagttgaaggtcagaactat----gagctttagtgaggaaagaaata |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4977 |
caaaggaaataggtaatgctgaaatattagatgagttaaccactaacagaggggagttgaaggtcagaactatatatgagctttagtgaggaaagaaata |
4878 |
T |
|
| Q |
110 |
atcaggtaaccataattcaaatgttgtttctttggatgaatttgagtcaaatagttttattctttctctaaagagatgcatcgtttttaatgatgagttt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4877 |
atcaggtaaccataattcaaatgttgtttctttggatgaatttgagttaaatagttttattctttctctaaagagatgcatcgtttttaatgatgagttt |
4778 |
T |
|
| Q |
210 |
ttgcaggtttatcctcataaacttgattcaaactagaatgtgatatt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4777 |
ttgcaggtttatcctcataaacttgattcaaactagaatgtgatatt |
4731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University