View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_88 (Length: 267)

Name: NF9461_low_88
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_88
NF9461_low_88
[»] chr1 (6 HSPs)
chr1 (153-239)||(1954930-1955025)
chr1 (155-211)||(20375791-20375847)
chr1 (153-239)||(13594355-13594450)
chr1 (153-239)||(38289830-38289925)
chr1 (153-211)||(20484188-20484246)
chr1 (153-211)||(13675891-13675949)
[»] chr7 (1 HSPs)
chr7 (153-211)||(6925367-6925425)
[»] chr4 (2 HSPs)
chr4 (153-211)||(500621-500679)
chr4 (204-239)||(35903215-35903250)
[»] chr2 (1 HSPs)
chr2 (153-211)||(37980970-37981028)
[»] chr3 (1 HSPs)
chr3 (153-239)||(30832741-30832836)
[»] scaffold0006 (1 HSPs)
scaffold0006 (153-211)||(173473-173531)


Alignment Details
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 1955025 - 1954930
Alignment:
Q  153 ctgtgaatgaagaatttgtccaattaatagattccattttaacgggtgattcctc---------aatctttgaattattcttactgattgttgaag 239  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  1955025 ctgtgaatgaagaatttgtccaattaatcgattccattttaacgggtgattcctcaatcacctcaatctttgaattattcttactgattgttgaag 1954930  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 20375791 - 20375847
Alignment:
Q  155 gtgaatgaagaatttgtccaattaatagattccattttaacgggtgattcctcaatc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20375791 gtgaatgaagaatttgtccaattaatagattccattttaacgggtgattcctcaatc 20375847  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 13594355 - 13594450
Alignment:
Q  153 ctgtgaatgaagaatttgtccaattaatagattccattttaacgggtgatt---------cctcaatctttgaattattcttactgattgttgaag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||         ||||||||||||||||||||||||| ||||||||||    
T  13594355 ctgtgaatgaagaatttgtccaattaatagattccattttaacaggtgattcctcaatcacctcaatctttgaattattcttactaattgttgaag 13594450  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 38289925 - 38289830
Alignment:
Q  153 ctgtgaatgaagaatttgtccaattaatagattccattttaacgggtgattcctc---------aatctttgaattattcttactgattgttgaag 239  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||         ||||||||||||||||||| ||||||||||||    
T  38289925 ctgtgaatgaagaatttgtccaattaatagattccattttaacgagtgattcctcaatcacctcaatctttgaattattcttattgattgttgaag 38289830  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 20484188 - 20484246
Alignment:
Q  153 ctgtgaatgaagaatttgtccaattaatagattccattttaacgggtgattcctcaatc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20484188 ctgtgaatgaagaatttgtccaattaatagattccattttaactggtgattcctcaatc 20484246  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 13675891 - 13675949
Alignment:
Q  153 ctgtgaatgaagaatttgtccaattaatagattccattttaacgggtgattcctcaatc 211  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  13675891 ctgtgaatgaagaatttgttcaattaatagattccattttaacaggtgattcctcaatc 13675949  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 6925425 - 6925367
Alignment:
Q  153 ctgtgaatgaagaatttgtccaattaatagattccattttaacgggtgattcctcaatc 211  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6925425 ctgtgaatgaagaatttgtccaattaatcgattccattttaacgggtgattcctcaatc 6925367  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 500679 - 500621
Alignment:
Q  153 ctgtgaatgaagaatttgtccaattaatagattccattttaacgggtgattcctcaatc 211  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  500679 ctgtgaatgaagaatttgtccaattaatcgattccattttaacgggtgattcctcaatc 500621  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 35903250 - 35903215
Alignment:
Q  204 cctcaatctttgaattattcttactgattgttgaag 239  Q
    ||||||||||||||||||||||||||||||||||||    
T  35903250 cctcaatctttgaattattcttactgattgttgaag 35903215  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 37981028 - 37980970
Alignment:
Q  153 ctgtgaatgaagaatttgtccaattaatagattccattttaacgggtgattcctcaatc 211  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37981028 ctgtgaatgaagaatttgtccaattaatagatttcattttaacgggtgattcctcaatc 37980970  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 30832836 - 30832741
Alignment:
Q  153 ctgtgaatgaagaatttgtccaattaatagattccattttaacgggtgatt---------cctcaatctttgaattattcttactgattgttgaag 239  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||         |||||||||||||||||||||||| |||||||||||    
T  30832836 ctgtgaaggaagaatttgtccaattaatagactccattttaacgggtgattcgtcaatcacctcaatctttgaattattcttaccgattgttgaag 30832741  T

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Target: scaffold0006 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 173473 - 173531
Alignment:
Q  153 ctgtgaatgaagaatttgtccaattaatagattccattttaacgggtgattcctcaatc 211  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  173473 ctgtgaatgaagaatttgttcaattaatagattccattttaacaggtgattcctcaatc 173531  T

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