View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9461_low_89 (Length: 257)
Name: NF9461_low_89
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_89 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 37474947 - 37475190
Alignment:
| Q |
14 |
agagccagagattgcaaaaatgatgatattcaaagaaatcatggaggtaatgaaactaatattttaaaggcactcccaatcaactataccatacgttttc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37474947 |
agagccagagattgcaaaaatgatgatattcaaagaaatcatggaggtaatgaaactaatattttaaaggcactcccaatcaactataccataagttttc |
37475046 |
T |
|
| Q |
114 |
tataggtccagcatgtaaaaacaccccattattctccttaaacctgtgcatgaaattgtatggaaccaacaatatacattcacataatttcgtgaaaaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37475047 |
tataggtccagcatgtaaaaacaccccattattctccttaaacctgtgcatgaaattgtatggaaccaacaatatacattcacataatttcgtgaaaaga |
37475146 |
T |
|
| Q |
214 |
ttagattattcgctacggaaaaacgtgttcctaagctattcatc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37475147 |
ttagattattcgctacggaaaaacgtgttcctaagctattcatc |
37475190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University