View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9461_low_9 (Length: 547)
Name: NF9461_low_9
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 42740369 - 42740868
Alignment:
| Q |
1 |
gatgagaccttcggtttatggttaaatcagttcaaccggttaaaccgttatgaaccattattgaaccggttaatgaataaataaatatgaagataaatca |
100 |
Q |
| |
|
|||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42740369 |
gatgagaccttcggttcatggttcaatcggttcaaccgattaaaccgttatgaaccattattgaaccggttaatgaataaataaatatgaagataaatca |
42740468 |
T |
|
| Q |
101 |
agaaaaacctctaaagattttattaattttcatattttaatgcaaccctagatattaatccatttagttgactcattgggaccaagtccaaatcaaagta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
42740469 |
agaaaaacctctaaagattttattaattttcatattttaatgcaaccctagatattaatccatttaattgactcattgggcccaagtccaaatcaaagta |
42740568 |
T |
|
| Q |
201 |
tccaaccctagatataaattagttgttgtatgactttgtatcacatttgttggtaatatttcctaagtcgccgctaacaaactttctctttcgttctact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42740569 |
tccaaccctagatataaattagttgttgtatgac-ttgtatcacatttgttagtaatatttcctaagtcgccgctaacaaactttctctttcgttctact |
42740667 |
T |
|
| Q |
301 |
gtagttcatgtttcnnnnnnncctt------------tccttatttcttcctcatgcttagagaccacaatttctacaaaagcaaactaaaagcttaaca |
388 |
Q |
| |
|
|||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42740668 |
gtagttcatgtttcttttttcctttccttattccttctccttatttcttcctcatgcttagagaccacaatttctacaaaagcaaactaaaagcttaaca |
42740767 |
T |
|
| Q |
389 |
tcacactcattccactcggtatccagcacaaagcaagttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagtatataa |
488 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42740768 |
tcacactcattccactcggtatccagcataaagcaagttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagtatataa |
42740867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 21744578 - 21744809
Alignment:
| Q |
1 |
gatgagaccttcggtttatggttaaatcagttcaaccggttaaaccgttatgaaccattattgaaccggttaatgaataaataaatatgaagataaatca |
100 |
Q |
| |
|
||||||| |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21744578 |
gatgagatcttcggttcatggttcaatcggttcaaccggttaaaccgttatgaaccattattgaaccggttaatgaataaataaatatgaagataaatca |
21744677 |
T |
|
| Q |
101 |
agaaaaacctctaaagattttattaattttcatattttaatgcaaccctagatattaatccatttagttgactcattgggaccaagtccaaatcaaagta |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
21744678 |
agaaaaacct-taaagattttattaattttcatattttaatgcaaccctagatattaatccatttagttgactcattggcccctagtccaaatcaaagta |
21744776 |
T |
|
| Q |
201 |
tccaaccctagatataaatt--agttgttgtat |
231 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
21744777 |
tccaaccctagatataaattacagttgttgtat |
21744809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 326 - 489
Target Start/End: Original strand, 21744851 - 21745014
Alignment:
| Q |
326 |
tccttatttcttcctcatgcttagagaccacaatttctacaaaagcaaactaaaagcttaacatcacactcattccactcggtatccagcacaaagcaag |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
21744851 |
tccttatttcttcctcatgcttagagaccacaatttctacaaaagcaaattaaaagcttaacatcccactcattccactcggtatccagcacaaagcaag |
21744950 |
T |
|
| Q |
426 |
ttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagtatataac |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21744951 |
ttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagtatataac |
21745014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 383 - 487
Target Start/End: Complemental strand, 181025 - 180921
Alignment:
| Q |
383 |
ttaacatcacactcattccactcggtatccagcacaaagcaagttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagt |
482 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |
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|
| T |
181025 |
ttaacatcacactcgttccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggctcagtagaacagaaaaaactccagaagcagt |
180926 |
T |
|
| Q |
483 |
atata |
487 |
Q |
| |
|
||||| |
|
|
| T |
180925 |
atata |
180921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 383 - 482
Target Start/End: Original strand, 6960271 - 6960370
Alignment:
| Q |
383 |
ttaacatcacactcattccactcggtatccagcacaaagcaagttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagt |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
6960271 |
ttaacatcacactcattccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggcttagtcggacagaaaaaacaccagaagcagt |
6960370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 383 - 482
Target Start/End: Original strand, 6967701 - 6967800
Alignment:
| Q |
383 |
ttaacatcacactcattccactcggtatccagcacaaagcaagttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagt |
482 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||| |||| |
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|
| T |
6967701 |
ttaacatcacattcattccactcagtatccagcaaaaagcaagttcattttcaagtactttaagatggctcagtcaaatagaaaaaacaccagaaacagt |
6967800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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