View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_93 (Length: 252)
Name: NF9461_low_93
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_93 |
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Alignment Details
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 37185110 - 37185179
Alignment:
| Q |
173 |
tttacctggttgttattgttggttgttgactcagaatgggaagggtttccatcctcgtccatgttctctg |
242 |
Q |
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| T |
37185110 |
tttacctggttgttattgttggttgttgactcagaatgggaagggttgccatcctcgtccatgttctctg |
37185179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 37184939 - 37184995
Alignment:
| Q |
1 |
aaaatcatcataaaaatctccatatccacacaaactgaaatcatcttcaagttcatg |
57 |
Q |
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| T |
37184939 |
aaaatcattataaaaatctccatatccacacaaactgaaatcatcatcaagttcatg |
37184995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 37186987 - 37187041
Alignment:
| Q |
4 |
atcatcataaaaatctccatatccacacaaactgaaatcatc-ttcaagttcatg |
57 |
Q |
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| T |
37186987 |
atcatcataaaaatctccatatccacacaaactaaaattatcatccaagttcatg |
37187041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 37185065 - 37185093
Alignment:
| Q |
127 |
catcatccaagttcatgtttctttttctt |
155 |
Q |
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| T |
37185065 |
catcatccaagttcatgtttctttttctt |
37185093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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