View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_96 (Length: 251)
Name: NF9461_low_96
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_96 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 45830066 - 45830299
Alignment:
| Q |
4 |
tcatgggttgaatgaggaagagaaaggagtcgtgggtccaagccgacatagatggaaactgtgttcttgactataaagaatttctggtaaaatatttcac |
103 |
Q |
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| T |
45830066 |
tcatgggttgaatgaggaagagaaaggagttgtgggtccaagccgacatatatggaaatggtgttcttgactataaagaatttatggtaaaatatttcac |
45830165 |
T |
|
| Q |
104 |
ttgaatgaatataatcaacaataaatcatacaagaaaagactctgaattttgaattacatttttccttggataaactatatctatgcaaccaatgactag |
203 |
Q |
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| T |
45830166 |
ttgaatgaatataatcaacaataaatcatacaagaaaagactctgaattttgaattacatttttcctcagataaactatatatatgcaaccaatgactag |
45830265 |
T |
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| Q |
204 |
aggcttagagtcaaccaatgactataaactatat |
237 |
Q |
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| T |
45830266 |
aggcttagtgtcaaccaatgactataaactatat |
45830299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 42558040 - 42557882
Alignment:
| Q |
4 |
tcatgggttgaatgaggaagaga--aaggagtcgtgggtccaagccgacatagatggaaactgtgttcttgactataaagaatttctggtaaaatatttc |
101 |
Q |
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||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
42558040 |
tcatgagttgaatgaggaagagataaaggagttgtgggtccaagctgacatagatggaaatggtgttcttgactataaagaatttctggtaaagtatttc |
42557941 |
T |
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| Q |
102 |
acttgaatgaatataatcaacaataaatcatacaagaaaagactctgaattttgaatta |
160 |
Q |
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| T |
42557940 |
acttgaaattatataaacaacaatctataatacaagaaaagactctgaattttgaatta |
42557882 |
T |
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