View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_98 (Length: 251)

Name: NF9461_low_98
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_98
NF9461_low_98
[»] chr2 (8 HSPs)
chr2 (16-251)||(16662474-16662709)
chr2 (146-251)||(43624993-43625098)
chr2 (97-251)||(16657999-16658153)
chr2 (149-251)||(11998992-11999094)
chr2 (180-251)||(12245888-12245959)
chr2 (151-251)||(7541812-7541912)
chr2 (178-251)||(14703021-14703094)
chr2 (77-125)||(43624927-43624975)
[»] chr4 (3 HSPs)
chr4 (147-251)||(9336373-9336477)
chr4 (148-248)||(30774835-30774935)
chr4 (180-251)||(35132071-35132142)
[»] chr7 (24 HSPs)
chr7 (76-251)||(8658874-8659049)
chr7 (148-251)||(10494856-10494959)
chr7 (78-251)||(8545149-8545319)
chr7 (77-251)||(8666931-8667105)
chr7 (97-251)||(13333850-13334001)
chr7 (147-248)||(3146846-3146947)
chr7 (148-251)||(29578154-29578257)
chr7 (157-251)||(8575918-8576012)
chr7 (147-251)||(1301043-1301147)
chr7 (148-248)||(8609500-8609600)
chr7 (149-251)||(6789096-6789198)
chr7 (150-251)||(8581285-8581386)
chr7 (167-251)||(8537638-8537722)
chr7 (147-247)||(8654032-8654132)
chr7 (148-247)||(8558966-8559065)
chr7 (85-202)||(8616201-8616315)
chr7 (180-251)||(27831357-27831428)
chr7 (184-251)||(27846588-27846655)
chr7 (149-251)||(8590222-8590324)
chr7 (145-194)||(8586245-8586294)
chr7 (189-251)||(29582323-29582385)
chr7 (151-251)||(7878215-7878315)
chr7 (148-208)||(8671623-8671683)
chr7 (145-212)||(8569891-8569958)
[»] chr1 (4 HSPs)
chr1 (154-251)||(34467270-34467367)
chr1 (147-251)||(4679039-4679143)
chr1 (180-251)||(15594649-15594720)
chr1 (176-245)||(52549434-52549503)
[»] chr5 (1 HSPs)
chr5 (147-251)||(28219500-28219604)
[»] chr8 (2 HSPs)
chr8 (176-236)||(43744427-43744487)
chr8 (202-251)||(12528141-12528190)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 16662709 - 16662474
Alignment:
Q  16 tcaccctcataaacttcaatcaaggcactatattggttatctttagaagtaagatattggtttgtcatcttgaaaggtacagaagtgttcctaggaacca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16662709 tcaccctcataaacttcaatcaaggcactatattggttatctttagaagtaagatattggtttgtcatcttgaaaggtacagaagtgttcctaggaacca 16662610  T
Q  116 ccacattcataatacgatcatcatgtaccgagataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16662609 ccacattcataatacgatcatcatgtaccgagataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaa 16662510  T
Q  216 cacagcagcttgcacagctgccccataagcaacagc 251  Q
    ||||||||||||||||||||||||||||||||||||    
T  16662509 cacagcagcttgcacagctgccccataagcaacagc 16662474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 43624993 - 43625098
Alignment:
Q  146 agataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagc 245  Q
    |||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||| |||||| | |||||| || |||||||| ||||||||    
T  43624993 agataccaagtgacaaaggggtaacatctcgcagcaccaattttggaacattcttaatgcctttactcaaaatagcagcctggacagctgcaccataagc 43625092  T
Q  246 aacagc 251  Q
    ||||||    
T  43625093 aacagc 43625098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 97 - 251
Target Start/End: Complemental strand, 16658153 - 16657999
Alignment:
Q  97 gaagtgttcctaggaaccaccacattcataatacgatcatcatgtaccgagataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacat 196  Q
    |||||||||||||||| ||| ||| |||| | | ||||| |||   |  |||||||||| |||||||||||||| |||| || |||||| | ||| ||||    
T  16658153 gaagtgttcctaggaatcacaacactcatgacatgatcaacatcggctaagataccaagcgacaatggggtaacatctctcaacaccaaatctgggacat 16658054  T
Q  197 ccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
     ||||| |||||||||||| | ||||||||| |||||||| || |||||||||||    
T  16658053 tcttaaagccttcactcaaaatagcagcttgaacagctgcaccgtaagcaacagc 16657999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 11998992 - 11999094
Alignment:
Q  149 taccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaac 248  Q
    ||||||| ||||| || ||||| ||  ||| |||||| |||||||||| |||||   |||||||||||| ||||||||| ||||||||||||||||| ||    
T  11998992 taccaagagacaaaggagtaacatcctgcaacaccaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagctgccccataagctac 11999091  T
Q  249 agc 251  Q
    |||    
T  11999092 agc 11999094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 12245959 - 12245888
Alignment:
Q  180 caccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
    |||||| |||||||||| |||||   ||| |||||||| ||||||||| |||||||||||||||||||||||    
T  12245959 caccaaatttggaacattcttaacatctttactcaacaaagcagcttgaacagctgccccataagcaacagc 12245888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 7541812 - 7541912
Alignment:
Q  151 ccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacag 250  Q
    ||||| ||||| || ||||| ||  |||||||||| |||||| | | ||||| |||| |||||||||  ||||| || ||||||||||||||||||||||    
T  7541812 ccaagagacaaaggtgtaacatcctgcagcaccaactttggagcgttcttaacgcctccactcaacaatgcagcctgaacagctgccccataagcaacag 7541911  T
Q  251 c 251  Q
    |    
T  7541912 c 7541912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 14703021 - 14703094
Alignment:
Q  178 agcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
    |||||||| || ||||||| ||| | | |||||||||||| |||||| || ||||||||||||||||| |||||    
T  14703021 agcaccaacttcggaacattcttgacgtcttcactcaacaaagcagcctgaacagctgccccataagctacagc 14703094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 43624927 - 43624975
Alignment:
Q  77 ttgtcatcttgaaaggtacagaagtgttcctaggaaccaccacattcat 125  Q
    ||||| |||||| |||||||||||| |||||||||| ||||||| ||||    
T  43624927 ttgtcttcttgacaggtacagaagtattcctaggaatcaccacactcat 43624975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 9336477 - 9336373
Alignment:
Q  147 gataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagca 246  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||  ||| ||||| |||||||||||| | ||||||||| |||||||| |||||||||    
T  9336477 gataccaagtgacaatggggtaacatctcgtagcaccaagttgggcgcattcttaaagccttcactcaaaatagcagcttgaacagctgcaccataagca 9336378  T
Q  247 acagc 251  Q
    |||||    
T  9336377 acagc 9336373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 30774835 - 30774935
Alignment:
Q  148 ataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaa 247  Q
    |||||||||||||| ||||| || |||||||||||||| |||||  ||| |||||||||||||||||| | |||||| || ||||||||||| | |||||    
T  30774835 ataccaagtgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaa 30774934  T
Q  248 c 248  Q
    |    
T  30774935 c 30774935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 35132071 - 35132142
Alignment:
Q  180 caccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
    |||||| ||||||||||  || ||||||| |||||||| |||||| || || |||||||||||||| |||||    
T  35132071 caccaactttggaacattttttatgcctttactcaacaaagcagcctgaactgctgccccataagctacagc 35132142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 251
Target Start/End: Original strand, 8658874 - 8659049
Alignment:
Q  76 tttgtcatcttgaaaggtacagaagtgttcctaggaaccaccacattcataatacgatcatcatgtaccgagataccaagtgacaatggggtaacgtctc 175  Q
    |||||| || ||| ||| |||| ||||||||| |||| ||| |||  ||| | | ||||| ||| ||| | |||||||||||||||||||||||| |||     
T  8658874 tttgtcttcctgagaggcacagtagtgttccttggaatcactacacccatgacatgatcaacatctactgcgataccaagtgacaatggggtaacatctt 8658973  T
Q  176 gcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
    |||||||||||||||| |||| ||||| |||||  || || ||||||||||| | |||||| ||||||||||||||    
T  8658974 gcagcaccaagtttgggacattcttaaagcctttgcttaaaacagcagcttgaagagctgcaccataagcaacagc 8659049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 10494959 - 10494856
Alignment:
Q  148 ataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaa 247  Q
    ||||||||||||||||||||||| ||||| ||||||||||| || |||| ||||| |||||||||||| | |||||| || |||||||| ||||||||||    
T  10494959 ataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaa 10494860  T
Q  248 cagc 251  Q
    ||||    
T  10494859 cagc 10494856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 251
Target Start/End: Original strand, 8545149 - 8545319
Alignment:
Q  78 tgtcatcttgaaaggtacagaagtgttcctaggaaccaccacattcataatacgatcatcatgtaccgagataccaagtgacaatggggtaacgtctcgc 177  Q
    |||| ||||||| ||||||||||| |||| ||||| ||||||| ||||||||   |   | ||||   |||||||||||||||| |||||||| |||||     
T  8545149 tgtcttcttgaatggtacagaagtattccaaggaatcaccacactcataata---tttccgtgtataaagataccaagtgacaaaggggtaacatctcgt 8545245  T
Q  178 agcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
    ||||||| |||||| |||| |||| || ||||||||| || |||||| || |||||||| ||||||||||||||    
T  8545246 agcaccatgtttgggacattcttattgtcttcactcagcaaagcagcctggacagctgcaccataagcaacagc 8545319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 251
Target Start/End: Original strand, 8666931 - 8667105
Alignment:
Q  77 ttgtcatcttgaaaggtacagaagtgttcctaggaaccaccacattcataatacgatcatcatgtaccgagataccaagtgacaatggggtaacgtctcg 176  Q
    ||||| |||||| |||||  |||||||| ||||||| ||||||| |||| ||| | |||  |  ||| || |||||||||||||| ||||| || |||||    
T  8666931 ttgtcttcttgacaggtatggaagtgtttctaggaatcaccacactcatgatatgttcaatacttacagaaataccaagtgacaaaggggtcacatctcg 8667030  T
Q  177 cagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
     ||||||||||| || |||| ||||  |||||||||||| | |||||| || |||||||| ||||||||||||||    
T  8667031 tagcaccaagttggggacattcttacagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagc 8667105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 251
Target Start/End: Complemental strand, 13334001 - 13333850
Alignment:
Q  97 gaagtgttcctaggaaccaccacattcataatacgatcatcatgtaccgagataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacat 196  Q
    |||||||||||||||| ||| |||||||| ||| | ||||    ||| || ||||||||||| |||||| |||| ||||| ||||||||||| || |||     
T  13334001 gaagtgttcctaggaatcacaacattcatgatatgttcata---tactgaaataccaagtgataatgggataacatctcgtagcaccaagttcgggacag 13333905  T
Q  197 ccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
     ||||| |||||||||||| | |||||| || |||||||| ||||||||||||||    
T  13333904 tcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagc 13333850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 3146846 - 3146947
Alignment:
Q  147 gataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagca 246  Q
    ||||||||| ||||| || | ||| ||| ||| |||||||||||||||||  |||| | |||||||||||| |||||||||||||||||| |||||||||    
T  3146846 gataccaagagacaaaggagcaacatcttgcaccaccaagtttggaacatttttaaagtcttcactcaacaaagcagcttgcacagctgcaccataagca 3146945  T
Q  247 ac 248  Q
    ||    
T  3146946 ac 3146947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 29578257 - 29578154
Alignment:
Q  148 ataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaa 247  Q
    |||||||| ||||| || ||||  |||||||  ||||| |||||||||| ||||||||| ||| |||||| |||||| ||||||||||| ||||||||||    
T  29578257 ataccaagcgacaagggtgtaatatctcgcaagaccaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 29578158  T
Q  248 cagc 251  Q
    ||||    
T  29578157 cagc 29578154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 8575918 - 8576012
Alignment:
Q  157 gacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
    ||||| || ||||| ||||| | ||||||||||||||||| |||| ||||||||||||||| ||||||||| ||| | || ||||||||||||||    
T  8575918 gacaacggtgtaacatctcgtaacaccaagtttggaacattcttactgccttcactcaacaaagcagcttggacaacagcaccataagcaacagc 8576012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 1301043 - 1301147
Alignment:
Q  147 gataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagca 246  Q
    |||||||||||||||||||||||| ||| |||||||||||||||| |||| ||| |  ||||  || || | ||||||||| | |||||| |||||||||    
T  1301043 gataccaagtgacaatggggtaacatcttgcagcaccaagtttgggacattcttgaatcctttgcttaaaatagcagcttgaatagctgcaccataagca 1301142  T
Q  247 acagc 251  Q
    |||||    
T  1301143 acagc 1301147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 8609500 - 8609600
Alignment:
Q  148 ataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaa 247  Q
    |||||||||||||| || ||||| |||||||||||||||||||||||    || |||||||||| ||||| |||||| || ||||| || ||||||||||    
T  8609500 ataccaagtgacaaaggtgtaacatctcgcagcaccaagtttggaactgatttgatgccttcacccaacaaagcagcctggacagcagcaccataagcaa 8609599  T
Q  248 c 248  Q
    |    
T  8609600 c 8609600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 6789096 - 6789198
Alignment:
Q  149 taccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaac 248  Q
    ||||||| ||||| || ||||| ||| ||||||||||||||||||||  ||||  |||||| ||||||| |||||| || |||||||| || ||||||||    
T  6789096 taccaagagacaacggtgtaacatcttgcagcaccaagtttggaacactcttagagccttcgctcaacaaagcagcctggacagctgcaccgtaagcaac 6789195  T
Q  249 agc 251  Q
    |||    
T  6789196 agc 6789198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 8581285 - 8581386
Alignment:
Q  150 accaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaaca 249  Q
    ||||||||||||||| ||||| |||||||  | |||||||||||||  ||||||||||||||| | || |||||| || | ||| || ||||||||||||    
T  8581285 accaagtgacaatggtgtaacatctcgcaaaatcaagtttggaacactcttaatgccttcactaaccaaagcagcctgaatagcagcaccataagcaaca 8581384  T
Q  250 gc 251  Q
    ||    
T  8581385 gc 8581386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 8537638 - 8537722
Alignment:
Q  167 taacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
    |||| ||||||||||||||||| ||||||  |||||||||| | ||||||| |||||| || ||||| || ||||||||||||||    
T  8537638 taacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagc 8537722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 8654032 - 8654132
Alignment:
Q  147 gataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagca 246  Q
    |||||||||||||||||||||||| || || ||||||||||| || |||| ||||| | |||||||||| | |||||| || ||||| || ||||| |||    
T  8654032 gataccaagtgacaatggggtaacatcacgtagcaccaagttggggacattcttaaagtcttcactcaaaatagcagcctgaacagcagcgccatatgca 8654131  T
Q  247 a 247  Q
    |    
T  8654132 a 8654132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 8558966 - 8559065
Alignment:
Q  148 ataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaa 247  Q
    |||||||| ||||| |||||||| |||| |||||||| ||||||||||| |||| || ||||||| | || | |||| || |||||||| ||||||||||    
T  8558966 ataccaagggacaaaggggtaacatctctcagcaccatgtttggaacattcttagtgtcttcactaagcaaaacagcctggacagctgcaccataagcaa 8559065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 8616201 - 8616315
Alignment:
Q  85 ttgaaaggtacagaagtgttcctaggaaccaccacattcataatacgatcatcatgtaccgagataccaagtgacaatggggtaacgtctcgcagcacca 184  Q
    |||| |||||||||||| |||||||||| ||||||| ||||||||   ||  | |  ||  |||||||||||||||  |||||||| ||||||||| |||    
T  8616201 ttgacaggtacagaagtattcctaggaatcaccacactcataata---tctcctttgactaagataccaagtgacagaggggtaacatctcgcagcgcca 8616297  T
Q  185 agtttggaacatccttaa 202  Q
    |||||||||||| |||||    
T  8616298 agtttggaacattcttaa 8616315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 27831428 - 27831357
Alignment:
Q  180 caccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
    ||||||||||||||||| | ||||| | |||||||||| |||||| ||||||||||| ||| ||||||||||    
T  27831428 caccaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagctgcaccaaaagcaacagc 27831357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 27846655 - 27846588
Alignment:
Q  184 aagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
    ||||||||||||| ||||||| | |||||||||| |||||| ||||||||||| ||| ||||||||||    
T  27846655 aagtttggaacattcttaatgtcatcactcaacaaagcagcctgcacagctgctccaaaagcaacagc 27846588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 8590222 - 8590324
Alignment:
Q  149 taccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaac 248  Q
    ||||||| |||||||| ||||| ||| | |||||||| || ||||||| |||||| || ||||  | || ||||||||| |||||||| |||||||||||    
T  8590222 taccaagagacaatggagtaacatcttgtagcaccaaattaggaacattcttaatcccatcacaaagcaaagcagcttgaacagctgcaccataagcaac 8590321  T
Q  249 agc 251  Q
    |||    
T  8590322 agc 8590324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 8586294 - 8586245
Alignment:
Q  145 gagataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaac 194  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  8586294 gagataccaagtgacagaggggtaacatctcgcagcaccaagtttggaac 8586245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 29582385 - 29582323
Alignment:
Q  189 tggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
    |||||||| || |||||||||| ||| || |||||| ||||||||||| ||||||||||||||    
T  29582385 tggaacattctcaatgccttcaatcagcaaagcagcctgcacagctgcaccataagcaacagc 29582323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 7878315 - 7878215
Alignment:
Q  151 ccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacag 250  Q
    ||||| |||||||| ||||| ||| ||| |||||| || ||||||| |||||| || ||||  | || |||||| || |||||||| |||||||||||||    
T  7878315 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 7878216  T
Q  251 c 251  Q
    |    
T  7878215 c 7878215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 8671683 - 8671623
Alignment:
Q  148 ataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgcctt 208  Q
    ||||||||||||||||| ||||| ||||| ||||||||||| || |||| ||||| |||||    
T  8671683 ataccaagtgacaatggcgtaacatctcgtagcaccaagttggggacattcttaaagcctt 8671623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 8569891 - 8569958
Alignment:
Q  145 gagataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcact 212  Q
    |||| ||||||||||||||| ||||| |||||||  |||||||||||||||  ||||| || ||||||    
T  8569891 gagacaccaagtgacaatggtgtaacatctcgcaaaaccaagtttggaacactcttaacgctttcact 8569958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 34467367 - 34467270
Alignment:
Q  154 agtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
    ||||||||||| ||||| |||||||||||||||||||||||||  |||| ||||| |||||||| ||||||||||||||||||  ||||||| |||||    
T  34467367 agtgacaatggtgtaacatctcgcagcaccaagtttggaacattgttaaagcctttactcaacaaagcagcttgcacagctgcgacataagcgacagc 34467270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 4679143 - 4679039
Alignment:
Q  147 gataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagca 246  Q
    |||||||||||||||||||||||| ||||||||||| || || || |||| |||||  ||||| ||||| | ||||||||| | |||||| |||||||||    
T  4679143 gataccaagtgacaatggggtaacatctcgcagcacaaaattcgggacattcttaaaaccttcgctcaaaatagcagcttggatagctgcaccataagca 4679044  T
Q  247 acagc 251  Q
    |||||    
T  4679043 acagc 4679039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 15594649 - 15594720
Alignment:
Q  180 caccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
    |||||||||||||||||  ||||  ||||||||||||| |||||| || |||||||| ||||||||||||||    
T  15594649 caccaagtttggaacatttttaaaaccttcactcaacaaagcagcctggacagctgcaccataagcaacagc 15594720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 52549503 - 52549434
Alignment:
Q  176 gcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagc 245  Q
    |||||||||| |||||||||| || |||||||||||||||||  ||||| || |||||||| ||||||||    
T  52549503 gcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagc 52549434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 28219500 - 28219604
Alignment:
Q  147 gataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagca 246  Q
    ||||||||| ||||| || ||||| ||| |||||||||| || ||||| |  |||| |||||||||||||| |||||| ||||||||||| |||||||||    
T  28219500 gataccaagagacaaaggtgtaacatcttgcagcaccaacttcggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccataagca 28219599  T
Q  247 acagc 251  Q
    |||||    
T  28219600 acagc 28219604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 43744427 - 43744487
Alignment:
Q  176 gcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgc 236  Q
    ||||||||| ||||||||| |  |||| |||||||||||||| |||||| |||||||||||    
T  43744427 gcagcaccacgtttggaacttttttaaagccttcactcaacaaagcagcctgcacagctgc 43744487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 12528141 - 12528190
Alignment:
Q  202 atgccttcactcaacacagcagcttgcacagctgccccataagcaacagc 251  Q
    |||||||||||||||| |||||| || ||||| || ||||||||||||||    
T  12528141 atgccttcactcaacaaagcagcctgaacagcggcaccataagcaacagc 12528190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University