View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9462_high_3 (Length: 219)

Name: NF9462_high_3
Description: NF9462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9462_high_3
NF9462_high_3
[»] chr7 (22 HSPs)
chr7 (1-219)||(44010547-44010765)
chr7 (8-166)||(44016511-44016669)
chr7 (10-163)||(44143722-44143873)
chr7 (1-166)||(25351518-25351686)
chr7 (9-166)||(42006838-42006995)
chr7 (1-161)||(34546734-34546895)
chr7 (3-163)||(30247139-30247303)
chr7 (1-166)||(25357212-25357381)
chr7 (1-161)||(25410297-25410463)
chr7 (1-164)||(7464364-7464534)
chr7 (8-130)||(2121073-2121199)
chr7 (38-166)||(25405625-25405748)
chr7 (1-137)||(2075282-2075412)
chr7 (38-166)||(7070006-7070129)
chr7 (27-163)||(8378357-8378486)
chr7 (59-164)||(15540843-15540948)
chr7 (38-163)||(3319869-3319990)
chr7 (59-166)||(3324634-3324741)
chr7 (38-128)||(7075007-7075094)
chr7 (1-95)||(44512443-44512541)
chr7 (1-134)||(21369809-21369943)
chr7 (103-164)||(44512362-44512423)
[»] chr4 (21 HSPs)
chr4 (1-164)||(16688793-16688955)
chr4 (1-163)||(36771563-36771725)
chr4 (8-164)||(47566666-47566822)
chr4 (1-158)||(36769646-36769803)
chr4 (1-163)||(4555915-4556075)
chr4 (1-164)||(18587133-18587299)
chr4 (1-166)||(4558477-4558642)
chr4 (1-163)||(15317124-15317290)
chr4 (26-166)||(15312512-15312652)
chr4 (9-165)||(4570268-4570422)
chr4 (1-164)||(4885041-4885203)
chr4 (1-164)||(8529434-8529601)
chr4 (16-164)||(7050124-7050270)
chr4 (1-163)||(16489515-16489681)
chr4 (1-92)||(31300590-31300681)
chr4 (1-164)||(55822430-55822592)
chr4 (27-163)||(15831347-15831478)
chr4 (38-166)||(11853776-11853900)
chr4 (3-166)||(16631352-16631514)
chr4 (1-163)||(25613810-25613971)
chr4 (2-165)||(16638995-16639156)
[»] chr3 (27 HSPs)
chr3 (1-163)||(3330059-3330221)
chr3 (1-167)||(27761836-27762001)
chr3 (8-164)||(11079692-11079846)
chr3 (1-157)||(47878033-47878186)
chr3 (1-166)||(10897172-10897339)
chr3 (1-170)||(20031163-20031332)
chr3 (1-128)||(48390188-48390317)
chr3 (1-166)||(47882735-47882897)
chr3 (1-163)||(10594883-10595049)
chr3 (1-163)||(4535782-4535946)
chr3 (10-128)||(10949148-10949266)
chr3 (1-166)||(29913802-29913970)
chr3 (1-166)||(10612624-10612793)
chr3 (9-113)||(38003044-38003147)
chr3 (1-155)||(7418230-7418382)
chr3 (38-163)||(10093923-10094043)
chr3 (38-163)||(10200805-10200925)
chr3 (38-166)||(6303522-6303645)
chr3 (38-166)||(10099921-10100044)
chr3 (7-163)||(5858716-5858874)
chr3 (27-128)||(16462393-16462494)
chr3 (26-164)||(29897526-29897664)
chr3 (27-166)||(22625826-22625960)
chr3 (59-163)||(27544517-27544619)
chr3 (27-163)||(54193426-54193557)
chr3 (27-166)||(54188710-54188844)
chr3 (1-73)||(13893630-13893700)
[»] chr5 (17 HSPs)
chr5 (1-163)||(11962287-11962448)
chr5 (1-164)||(42238427-42238589)
chr5 (1-163)||(16093144-16093307)
chr5 (1-163)||(22673001-22673163)
chr5 (1-157)||(17841110-17841264)
chr5 (1-166)||(28786571-28786733)
chr5 (33-173)||(20437119-20437259)
chr5 (1-163)||(1240595-1240760)
chr5 (2-166)||(10627534-10627698)
chr5 (1-137)||(25452662-25452798)
chr5 (1-165)||(40222932-40223099)
chr5 (1-137)||(25445663-25445799)
chr5 (27-164)||(35385302-35385434)
chr5 (36-163)||(1171020-1171142)
chr5 (7-166)||(31782308-31782465)
chr5 (27-163)||(2297849-2297979)
chr5 (1-73)||(26406409-26406481)
[»] chr1 (10 HSPs)
chr1 (1-157)||(4144543-4144698)
chr1 (8-164)||(25134245-25134400)
chr1 (1-165)||(21353195-21353363)
chr1 (1-164)||(2393132-2393298)
chr1 (38-166)||(9521936-9522059)
chr1 (1-166)||(2401071-2401236)
chr1 (27-165)||(9526666-9526798)
chr1 (59-163)||(2232822-2232926)
chr1 (1-166)||(3090957-3091120)
chr1 (1-73)||(14997209-14997281)
[»] chr8 (19 HSPs)
chr8 (1-164)||(17799277-17799439)
chr8 (1-163)||(3276465-3276626)
chr8 (1-137)||(21034036-21034173)
chr8 (9-163)||(26268084-26268238)
chr8 (1-163)||(23179410-23179576)
chr8 (1-153)||(33032821-33032973)
chr8 (1-165)||(9020955-9021122)
chr8 (27-166)||(28890965-28891098)
chr8 (27-165)||(28895702-28895834)
chr8 (38-160)||(4812336-4812453)
chr8 (1-163)||(590961-591126)
chr8 (27-166)||(16757107-16757242)
chr8 (59-166)||(28328135-28328242)
chr8 (40-163)||(16752374-16752493)
chr8 (39-163)||(25684852-25684972)
chr8 (59-163)||(28332858-28332962)
chr8 (8-73)||(30423389-30423453)
chr8 (63-163)||(29554705-29554803)
chr8 (90-166)||(4823548-4823622)
[»] chr6 (22 HSPs)
chr6 (21-164)||(19701756-19701898)
chr6 (1-154)||(12166007-12166161)
chr6 (1-163)||(13467318-13467482)
chr6 (1-166)||(25941836-25942003)
chr6 (1-163)||(3577338-3577505)
chr6 (1-128)||(26643341-26643468)
chr6 (1-128)||(26749307-26749434)
chr6 (1-166)||(17694698-17694867)
chr6 (1-164)||(33215994-33216160)
chr6 (1-166)||(22351701-22351868)
chr6 (1-163)||(25465754-25465914)
chr6 (1-164)||(22342651-22342816)
chr6 (38-163)||(13883685-13883806)
chr6 (38-163)||(31248544-31248664)
chr6 (27-137)||(17038436-17038541)
chr6 (27-166)||(13878938-13879073)
chr6 (38-164)||(35201156-35201276)
chr6 (59-164)||(16786162-16786265)
chr6 (1-161)||(17066019-17066179)
chr6 (36-164)||(26887076-26887199)
chr6 (85-166)||(5165690-5165771)
chr6 (38-128)||(30987389-30987475)
[»] chr2 (18 HSPs)
chr2 (8-165)||(37170605-37170761)
chr2 (1-166)||(20054607-20054780)
chr2 (1-172)||(27517482-27517654)
chr2 (1-163)||(20049866-20050036)
chr2 (27-166)||(22717080-22717217)
chr2 (1-164)||(38191179-38191346)
chr2 (27-166)||(2736404-2736539)
chr2 (1-163)||(17943702-17943867)
chr2 (27-163)||(22712374-22712508)
chr2 (1-161)||(12781075-12781236)
chr2 (27-163)||(33670817-33670949)
chr2 (1-161)||(30479161-30479322)
chr2 (27-152)||(2741140-2741261)
chr2 (38-166)||(45679933-45680057)
chr2 (40-166)||(39680257-39680380)
chr2 (40-163)||(39687201-39687321)
chr2 (59-164)||(17462664-17462768)
chr2 (3-75)||(28458770-28458841)
[»] scaffold0131 (1 HSPs)
scaffold0131 (38-163)||(17704-17824)
[»] scaffold0006 (1 HSPs)
scaffold0006 (33-163)||(231321-231445)
[»] scaffold1050 (1 HSPs)
scaffold1050 (59-164)||(2918-3022)
[»] scaffold0256 (1 HSPs)
scaffold0256 (33-137)||(16533-16632)
[»] scaffold0209 (1 HSPs)
scaffold0209 (85-166)||(16882-16962)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 44010765 - 44010547
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44010765 cgaacttggtaaacaaattattgtgttctccttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgcttgatttgattacttg 44010666  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaattttaaatagataattgtctgattgcttaaacatag 200  Q
    ||||||||||||| |||||||||| |||||||||||| ||||||||  ||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  44010665 atattaatttgctccatgcatcaaatttattattggtgtagttttcagaacgaattcacaacaattttaaatagataactgtctgattgcttaaacatag 44010566  T
Q  201 ggaattcaatttgtgtata 219  Q
    |||||||||||||||||||    
T  44010565 ggaattcaatttgtgtata 44010547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 44016669 - 44016511
Alignment:
Q  8 ggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaa 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||  |||||||||||||||| ||||||    
T  44016669 ggtaaacaaattcttgtgttctccttcttccttttatctcttgttgtttacttttgttttaattatttgctatccacttgatttgattacttggtattaa 44016570  T
Q  108 tttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    |||||| || |||||||||||||||||||| | |||||| |||| ||||||||||||||    
T  44016569 tttgctccacgcatcaagtttattattggtgtggttttcacaacgaattcacaacaatt 44016511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 44143873 - 44143722
Alignment:
Q  10 taaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatt 109  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  44143873 taaacaaattcttgcgttctccttcttccttttatctcttgctgtttacttttgtttgaattatttgctacccgcttgatttgattacttggtattaatt 44143774  T
Q  110 tgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    |||| |||||||||||||  |||||||| | |||||| |||| ||||| |||||    
T  44143773 tgctccatgcatcaagtt--ttattggtgtggttttcacaacgaattcgcaaca 44143722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 25351518 - 25351686
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgatta 96  Q
    |||||| ||||||||||||||||||||||    || ||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||    
T  25351518 cgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgctgtttacttttgtttggattatttgctacccgcttgatttgatta 25351617  T
Q  97 cttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    |||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||||||||||    
T  25351618 cttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaatt 25351686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 42006838 - 42006995
Alignment:
Q  9 gtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaat 108  Q
    |||||||||||| ||| ||||| ||||||||||||| |||| |||||||||||||||||||||||||| ||  || |||||||||||||||  |||||||    
T  42006838 gtaaacaaattcatgtattctccttcttccttttatttcttactgtttacttttgtttgaattatttgatactcgcttgatttgattactttgtattaat 42006937  T
Q  109 ttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    |||||||| ||||||||||||||||| |||| |||||| | || ||||||||||||||    
T  42006938 ttgcttcacgcatcaagtttattatttgtatggttttcactacgaattcacaacaatt 42006995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 34546895 - 34546734
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattac 97  Q
    |||||| |||||||||||||||||||||| |||  ||||||||||| ||||||||||||| ||||||||| ||||||||||| ||| || ||||||||||    
T  34546895 cgaactgggtaaacaaattcttgtgttcttcttcttcttccttttacctcttgctgtttatttttgtttggattatttgctacccgcttaatttgattac 34546796  T
Q  98 ttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaa 161  Q
    |||||||||||||| | || ||||||||||  |||||||| | |||||| ||||||||||||||    
T  34546795 ttgatattaatttgttccacgcatcaagtt--ttattggtgtggttttctcaacaaattcacaa 34546734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 30247139 - 30247303
Alignment:
Q  3 aacttggtaaacaaattcttgtgttctctttct----tccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattact 98  Q
    |||| |||||||||||| ||||||||| | |||    |||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||||||||||||||    
T  30247139 aactgggtaaacaaattattgtgttctttctctcccttccttttatctcttgccgtttatttttgtttggattatttgctacccgcttgatttgattact 30247238  T
Q  99 tgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    || |||||||||||| |  ||||||||||| |||||||| | |||||| |||| |||||||||||    
T  30247239 tggtattaatttgctccgcgcatcaagttttttattggtgtggttttctcaacgaattcacaaca 30247303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 25357212 - 25357381
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgt----tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgatta 96  Q
    |||||| |||||||||||||||||||    ||||| |||||||| |||||||||||||||  |||| |||  ||||||||||| ||| ||||||||||||    
T  25357212 cgaactgggtaaacaaattcttgtgtcctttctctctcttccttctatctcttgctgttttattttcttttgattatttgctacccgcttgatttgatta 25357311  T
Q  97 cttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    |||||||||| |||||| ||  |||||||||| |||||||| | |||||| |||| |||| |||||||||    
T  25357312 cttgatattattttgctccacacatcaagtttgttattggtgtggttttctcaacgaattgacaacaatt 25357381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 25410297 - 25410463
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgt------tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgat 94  Q
    |||||| |||||||||||||||||||      ||||| |||||||| |||||||||||||||  ||||||||| ||||||||||| ||| ||||||||||    
T  25410297 cgaactgggtaaacaaattcttgtgtcctttctctctctcttccttctatctcttgctgttttattttgtttggattatttgctacccgcttgatttgat 25410396  T
Q  95 tacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaa 161  Q
    |||||||||||| ||||||  |  |||||||||| ||||| || |  ||||| ||||||||||||||    
T  25410397 tacttgatattattttgctcaacacatcaagtttgttattagtgtgattttctcaacaaattcacaa 25410463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 7464534 - 7464364
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgttt-----gaattatttgctatccgtttgatttg 92  Q
    |||||| |||||||||||||||||||||| |||  ||||||||||||||||||||||||  |||| |||     | |||| |||||| ||| ||||||||    
T  7464534 cgaactgggtaaacaaattcttgtgttcttcttcttcttccttttatctcttgctgttttttttttttttttttggattaattgctacccgcttgatttg 7464435  T
Q  93 attacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    |||||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||||||||    
T  7464434 attacttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaa 7464364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 2121073 - 2121199
Alignment:
Q  8 ggtaaacaaattcttgtgttc-tctt--tcttccttttatctcttgctgttt-acttttgtttgaattatttgctatccgtttgatttgattacttgata 103  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||||||||| ||||||||||| |||| |||||||||  ||||||||||| |||| ||    
T  2121073 ggtaaacaaattcttgtgttcatcttcttcttccttttatctcttgctgttttacttttgtttggattaattgctatccacttgatttgattgcttggta 2121172  T
Q  104 ttaatttgcttcatgcatcaagtttat 130  Q
    |||||||||| ||  ||||||||||||    
T  2121173 ttaatttgctccacacatcaagtttat 2121199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 25405625 - 25405748
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  25405625 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 25405719  T
Q  138 atagttttcgcaacaaattcacaacaatt 166  Q
     | |||||| |||| ||||||||||||||    
T  25405720 gtggttttctcaacgaattcacaacaatt 25405748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 2075282 - 2075412
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||||||||||||| ||| |||||  |||||||||| |||    ||||||| ||||||||||| ||| ||| ||||||||||||    
T  2075282 cgaactgggtaaacaaattcttgtgttctccttcctcctt--atctcttgctattt----ttgtttggattatttgctacccgcttgttttgattacttg 2075375  T
Q  101 atattaatttgcttcatgcatcaagtttattattggt 137  Q
     |||||||||||| || ||||||||||| ||||||||    
T  2075376 gtattaatttgctccacgcatcaagttttttattggt 2075412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 7070006 - 7070129
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||   |||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||  ||||||||    
T  7070006 cttttatctcttgctgttt---tttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagtt--ttattggt 7070100  T
Q  138 atagttttcgcaacaaattcacaacaatt 166  Q
     | |||||| | || ||||||||||||||    
T  7070101 gtggttttctctacgaattcacaacaatt 7070129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 8378486 - 8378357
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| ||||||||||||||||||||||||     |||||| ||||||||||| ||| || ||||||||||||| |||||||||||| || |||||||||    
T  8378486 tctctctcttccttttatctcttgctgttt-----tgtttggattatttgctacccgcttaatttgattacttggtattaatttgctccacgcatcaagt 8378392  T
Q  127 ttattattggtatagttttcgcaacaaattcacaaca 163  Q
    |  |||||||| | |||||| |||| |||||||||||    
T  8378391 t--ttattggtctggttttctcaacgaattcacaaca 8378357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 15540948 - 15540843
Alignment:
Q  59 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattc 157  Q
    ||||||||| ||||||||||||||| ||| |||||||||||| |||||||||||| || ||||||||||| |||||||| | | ||||| |||| |||||    
T  15540948 ttttgtttggattatttgctatccgcttgttttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattc 15540850  T
Q  158 acaacaa 164  Q
    |||||||    
T  15540849 acaacaa 15540843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 3319990 - 3319869
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||    ||||||| |||| |||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  3319990 cttttatctcttgctgttt----ttgtttggattaattgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 3319896  T
Q  138 atag-ttttcgcaacaaattcacaaca 163  Q
     | | ||||| |||| |||||||||||    
T  3319895 gtggtttttctcaacgaattcacaaca 3319869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 3324741 - 3324634
Alignment:
Q  59 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattc 157  Q
    ||||||||| |||| |||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| |||||||| | | ||||| |||| |||||    
T  3324741 ttttgtttgcattaattgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattc 3324643  T
Q  158 acaacaatt 166  Q
    |||||||||    
T  3324642 acaacaatt 3324634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 7075007 - 7075094
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagttt 128  Q
    |||||||||||||||||||   |||||||| ||||||||||| ||| |||||||||||||||| ||||||||| || || |||||||||||    
T  7075007 cttttatctcttgctgttt---tttgtttggattatttgctacccgcttgatttgattacttggtattaattttctccacgcatcaagttt 7075094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 44512541 - 44512443
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgtt---ctctttcttccttttatctcttgctgtttacttttg-tttgaattatttgctatccgtttgatttgatt 95  Q
    |||||| ||||||||||||||||||||   ||  |||||||||||||||||||||||||||||||| |||| ||||||||||| ||| ||| |||||||    
T  44512541 cgaactgggtaaacaaattcttgtgttattcttcttcttccttttatctcttgctgtttacttttgttttggattatttgctacccgcttgctttgatt 44512443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 21369809 - 21369943
Alignment:
Q  1 cgaacttggtaaacaaatt-cttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgct-atccgtttgatttgattact 98  Q
    |||||| ||||||||| || |||||| |||| ||| |||||| ||||||||||||||| |||| ||||||||||||  | | ||| ||||||||||||||    
T  21369809 cgaactgggtaaacaattttcttgtggtctccttcatccttt-atctcttgctgtttatttttatttgaattattttgtcacccgcttgatttgattact 21369907  T
Q  99 tgatattaatttgcttcatgcatcaagtttattatt 134  Q
    |  |||||||||||| || ||||||| |||||||||    
T  21369908 tagtattaatttgctccacgcatcaaatttattatt 21369943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 44512423 - 44512362
Alignment:
Q  103 attaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    ||||||||||| || ||||||||||| |||||||| |  ||||| |||| ||||||||||||    
T  44512423 attaatttgctccacgcatcaagttttttattggtgtgtttttctcaacgaattcacaacaa 44512362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 16688955 - 16688793
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||    
T  16688955 cgaactgggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttggattatttgctacccgcttgattcgattacttg 16688856  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    ||||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||||||||    
T  16688855 atattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaa 16688793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 36771563 - 36771725
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| |||    
T  36771563 cgaactaggtaaacaaattcttgtgttctccttcttccttttatctcttgccgtttacttttgtttgaattatttgctacccgcttgatttgattatttg 36771662  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
     ||||||||||||  | |||||||||||||||||| | | |||||| ||||||||||||||||    
T  36771663 gtattaatttgctcaacgcatcaagtttattattgttgtggttttcacaacaaattcacaaca 36771725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 47566666 - 47566822
Alignment:
Q  8 ggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaa 107  Q
    |||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  47566666 ggtaaacaaattcttgagttctccttcttccttttatctcttgttgttttcttttgtttgaattatttgatatccgcttgatttgattacttggtattaa 47566765  T
Q  108 tttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    |||||| ||||||||||||||||||||||| | |||||| |||  ||||||||||||    
T  47566766 tttgctccatgcatcaagtttattattggtgtggttttctcaaagaattcacaacaa 47566822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 36769646 - 36769803
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| | ||||||||||||||||||||| |||||||||||||||||||  |||| |||||||||||||||||||||| ||  ||||||||||||||||    
T  36769646 cgaactggataaacaaattcttgtgttctccttcttccttttatctcttgtcgtttgcttttgtttgaattatttgctacccacttgatttgattacttg 36769745  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattca 158  Q
    |||||||||||||||| |||||||||||||||||||| | |||||| |||| ||||||    
T  36769746 atattaatttgcttcacgcatcaagtttattattggtgtggttttcacaacgaattca 36769803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 4556075 - 4555915
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| |||||||||||| |||    
T  4556075 cgaactgggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttggattaattgctacccgcttgatttgattatttg 4555976  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
     |||||||||||| || ||||||| ||  |||||||| | |||||| ||||||||||||||||    
T  4555975 gtattaatttgctccacgcatcaaatt--ttattggtgtggttttctcaacaaattcacaaca 4555915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 18587133 - 18587299
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgatta 96  Q
    |||||| ||||||||||||||||||||||    || ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  18587133 cgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgctgtttatttttgtttgaattatttgctacccgcttgatttgatta 18587232  T
Q  97 cttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    |||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||||||||    
T  18587233 cttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaa 18587299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 4558477 - 4558642
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||| ||||||||  || ||||||||||||||||||||| | |||||||||||||||||| || ||| ||||||||||||||||    
T  4558477 cgaactgggtaaacaaattcatgtgttcttctttttccttttatctcttgctgttaatttttgtttgaattatttgatacccgcttgatttgattacttg 4558576  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
     || ||||||||| || |||||||||||||||||||| | |||||| |||| ||||||||||||||    
T  4558577 gtaataatttgctccacgcatcaagtttattattggtgtggttttctcaacgaattcacaacaatt 4558642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 15317124 - 15317290
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgatta 96  Q
    |||||| ||||||||||||||||||||||    || ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| |||||    
T  15317124 cgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgctgtttacttttgtttggattatttgctacccgcttgattggatta 15317223  T
Q  97 cttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    |||| |||| ||||||| |||||||||||||| |||||||| | |||||| |||| |||||||||||    
T  15317224 cttggtattcatttgctccatgcatcaagttttttattggtgtggttttctcaacgaattcacaaca 15317290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 166
Target Start/End: Original strand, 15312512 - 15312652
Alignment:
Q  26 ttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaag 125  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||    
T  15312512 ttctctctcttccttttatctcttgctgtttacttttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaag 15312611  T
Q  126 tttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    ||| |||||||| | |||||| |||| ||||||||||||||    
T  15312612 ttttttattggtgtggttttctcaacgaattcacaacaatt 15312652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 4570268 - 4570422
Alignment:
Q  9 gtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaat 108  Q
    |||||||||||||||||||||  ||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||||    
T  4570268 gtaaacaaattcttgtgttcttcttcttccttttatctcttgttgtttactattgtttgaattatttgctacccgcttgatttgattacttggtattaat 4570367  T
Q  109 ttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaat 165  Q
    ||||| || ||||||||||  |||||||| | ||||||  ||| |||||||||||||    
T  4570368 ttgctccacgcatcaagtt--ttattggtgtggttttcaaaacgaattcacaacaat 4570422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 4885041 - 4885203
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||| || ||| ||||||||||||||||    
T  4885041 cgaactgggtaaacaaattcttgtgttctctttcttccttttatctcttgttatttacctttgtttggattatttgttacccgcttgatttgattacttg 4885140  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
     |||||||||||| || ||||||||||| |||||||| |  ||||  |||| ||||||||||||    
T  4885141 gtattaatttgctccacgcatcaagttt-ttattggtgtgatttttacaacgaattcacaacaa 4885203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 8529434 - 8529601
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgttt-gaattatttgctatccgtttgatttgatt 95  Q
    |||||| ||||||||||||||||||||||    || |||||||||||||||||||||||||||||||||| | | ||||||||| ||| |||||||||||    
T  8529434 cgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgctgtttacttttgttttggactatttgctacccgcttgatttgatt 8529533  T
Q  96 acttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    ||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||||||||    
T  8529534 acttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaa 8529601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 7050270 - 7050124
Alignment:
Q  16 aattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttc 115  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||| ||||| |||||||||||| |    
T  7050270 aattcttgtgttctccttctttcttttatctcttgctgtttaattttgtttgaattatatgctacccgcttgatttgataacttggtattaatttgctcc 7050171  T
Q  116 atgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    | ||||||||||  |||||||| | |||||| |||| ||||||||||||    
T  7050170 acgcatcaagtt--ttattggtgtggttttcacaacgaattcacaacaa 7050124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 16489515 - 16489681
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttc----tctttcttccttttatctcttgctgtttacttttgttt-gaattatttgctatccgtttgatttgatt 95  Q
    |||||| |||||||||||| ||||||||    ||| |||| ||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||    
T  16489515 cgaactaggtaaacaaattattgtgttcgttctctctcttacttttatctcttgctgtttacttttgttttggattatttgctacccgcttgatttgatt 16489614  T
Q  96 acttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    |||||||||||||||||| ||  |||||||||| |||||||| | |||||| |||| |||||||||||    
T  16489615 acttgatattaatttgctccacacatcaagttt-ttattggtgtggttttctcaacgaattcacaaca 16489681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 31300590 - 31300681
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttg 92  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||    
T  31300590 cgaactgggtaaacaaattattgtgttctctttcttccttttatctcttgctgtttacttttgtttggattatttgctacccgcttgatttg 31300681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 55822430 - 55822592
Alignment:
Q  1 cgaacttggtaaacaaat-tcttgtgtt--ctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattac 97  Q
    |||||| ||||||||||| |||||||||  |||| |||  |||||||||||||||||||   |||||||| |||| |||||| |||  ||||||||||||    
T  55822430 cgaactgggtaaacaaatatcttgtgttttctctctctctcttttatctcttgctgttt---tttgtttggattaattgctacccgcctgatttgattac 55822526  T
Q  98 ttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    |||||||||||||||| ||  |||||||||| ||||||||||||||||| |||| ||||||||||||    
T  55822527 ttgatattaatttgctccacacatcaagttt-ttattggtatagttttctcaacgaattcacaacaa 55822592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 15831347 - 15831478
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| |||| |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || |||||||||    
T  15831347 tctctctctttcttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagt 15831442  T
Q  127 ttattattggtatagttttcgcaacaaattcacaaca 163  Q
    || |||||||| | |||||| |||| |||||||||||    
T  15831443 tt-ttattggtgtggttttctcaacgaattcacaaca 15831478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 11853776 - 11853900
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| ||||||||||| |||| |||||||||||| ||  |||||||||| ||||||||    
T  11853776 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattgcttggtattaatttgctccacccatcaagttttttattggt 11853871  T
Q  138 atagttttcgcaacaaattcacaacaatt 166  Q
     | |||||| |||| ||||||||||||||    
T  11853872 gtggttttctcaacgaattcacaacaatt 11853900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 16631352 - 16631514
Alignment:
Q  3 aacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgttta--cttttgtttgaattat-ttgctatccgtttgatttgattactt 99  Q
    |||| ||||| |||||  ||||||| || |||||||||| |||||||| ||||||  |||||| ||||||||| |||| | ||| ||||||||||| |||    
T  16631352 aactgggtaatcaaatcattgtgttatccttcttccttt-atctcttgttgtttatgcttttgcttgaattatattgccacccgcttgatttgatttctt 16631450  T
Q  100 gatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    | | ||| |||||| |||| ||||||||| |||||||| | ||||| ||||||||||||||||||||    
T  16631451 ggtttta-tttgctccatggatcaagttt-ttattggttt-gtttttgcaacaaattcacaacaatt 16631514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 25613971 - 25613810
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgct-atccgtttgatttgattactt 99  Q
    |||||| ||||||||||||||||||||||| ||| ||| || |||||||||| |||| |||||||||||||||||  | | | | |||||||||||  ||    
T  25613971 cgaactaggtaaacaaattcttgtgttctccttcctccatt-atctcttgctatttatttttgtttgaattattttttcacctgcttgatttgattgttt 25613873  T
Q  100 gatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    | | ||||||||||  |  |||||||||| |||||||| | ||||| ||||| |||||| ||||    
T  25613872 ggttttaatttgctcaacacatcaagttttttattggtgt-gtttttgcaacgaattcataaca 25613810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 16638995 - 16639156
Alignment:
Q  2 gaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgttta-cttttgtttgaattat-ttgctatccgtttgatttgattactt 99  Q
    ||||| ||||||||||| |||||| | || || ||||||| |||||||||||||||  ||||| ||| ||||| ||||  |||| ||||||||||| |||    
T  16638995 gaactgggtaaacaaatccttgtgatatccttattccttt-atctcttgctgtttattttttgcttggattatattgccttccgcttgatttgattgctt 16639093  T
Q  100 gatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaat 165  Q
    | | || ||||||| ||  |||||||||| |||||||||| ||||| ||||  |||||||||||||    
T  16639094 ggt-tttatttgctccacacatcaagttt-ttattggtat-gtttttgcaaagaattcacaacaat 16639156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 3330059 - 3330221
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  3330059 cgaactgggtacacaaattcttgtgttctccttcttccttttatctcttgctgtttacttttgtttgagttatttgctatccgcttgatttgattacttg 3330158  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
     |||||||||||| |  ||||||||||| |||||||| | |||||| |||| |||||||||||    
T  3330159 gtattaatttgctccgcgcatcaagtttgttattggtgtggttttcacaacgaattcacaaca 3330221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 27762001 - 27761836
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||    
T  27762001 cgaactgggtaaacaaattcttgtgttcttcttcttccttttatctcttgctgtttacttttgtttgaattatttgctacccgcttgatttgattagttg 27761902  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaattt 167  Q
    ||||||||||||| |||||||||||||| |||||||| |  ||||| |||| |||| ||||||||||    
T  27761901 atattaatttgctccatgcatcaagttt-ttattggtgtgtttttcacaacgaatttacaacaattt 27761836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 11079692 - 11079846
Alignment:
Q  8 ggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaa 107  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||    
T  11079692 ggtaaacaaattcttgtgttctccttcttccttttatctcttgctgtttacttttgtttgaattatttgctacccacttgatttgattacttggtattaa 11079791  T
Q  108 tttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    |||||| || ||||||||||  |||||||| | |||||| |||| ||||||||||||    
T  11079792 tttgctccacgcatcaagtt--ttattggtgtggttttcacaacgaattcacaacaa 11079846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 47878186 - 47878033
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  47878186 cgaactgggtaaacaaattcttgtgttctcattcttccttttatctcttgctgtttacttttgtttgaattatttgctacccacttgatttgattacttg 47878087  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattc 157  Q
     |||||||||||| || ||||||||||  |||||||| | |||||| |||| |||||    
T  47878086 -tattaatttgctccacgcatcaagtt--ttattggtgtggttttcacaacgaattc 47878033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 10897172 - 10897339
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattac 97  Q
    |||||| |||||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||||||||||    
T  10897172 cgaactgggtaaacaaattcttgtgttcttcttcttcttccttttatctcttgctgtttatttttgtttggattatttgctacccgcttgatttgattac 10897271  T
Q  98 ttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    ||| |||||||||| | || ||||||||||| |||||||| | |||||| |||| ||||||||||||||    
T  10897272 ttggtattaatttgttccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaatt 10897339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 20031332 - 20031163
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||   ||||||||| |||||| |||| ||| ||||||||||||||||    
T  20031332 cgaactgggtaaacaaattcttgtgttctccttcttccttttatctcttgctgttcgtttttgtttggattattcgctacccgcttgatttgattacttg 20031233  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaattttaa 170  Q
     ||||||||||||  | |||||| |||| |||||||| | |||||| |||| ||||||||||||| ||||    
T  20031232 gtattaatttgctctacgcatcatgttttttattggtgtggttttcacaacgaattcacaacaatattaa 20031163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 48390317 - 48390188
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttcc--ttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattact 98  Q
    |||||| ||||||||||||||||||||||| |||||||  ||||||||||||||||||  |||||||||||||||||| || ||||||||||||||||||    
T  48390317 cgaactgggtaaacaaattcttgtgttctccttcttccctttttatctcttgctgtttgtttttgtttgaattatttgttacccgtttgatttgattact 48390218  T
Q  99 tgatattaatttgcttcatgcatcaagttt 128  Q
    ||||||||||||||| || |||||||||||    
T  48390217 tgatattaatttgctccacgcatcaagttt 48390188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 47882897 - 47882735
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||||| |||    
T  47882897 cgaactgggtaaacaaattcttgtgttccctt-ctttcttttatctcttgctgtttacttttgtttgaattatttactacccacttgatttgattaattg 47882799  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
     |||||||||||| || ||||||||||  |||||||| | |||||| |||  ||||||||||||||    
T  47882798 gtattaatttgctccacgcatcaagtt--ttattggtgtggttttcacaatgaattcacaacaatt 47882735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 10595049 - 10594883
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttg-tttgaattatttgctatccgtttgatttgatt 95  Q
    |||||| ||||||||||||||||||||||    || ||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||    
T  10595049 cgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgctgtttacttttgttttggattatttgctacccgcttgatttgatt 10594950  T
Q  96 acttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    ||||| ||||||||| || || | ||||||||| |||||||| | |||||| |||| |||||||||||    
T  10594949 acttggtattaatttactccacgtatcaagttt-ttattggtgtggttttctcaacgaattcacaaca 10594883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 4535782 - 4535946
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtt---tacttttgtttgaattatttgctatccgtttgatttgattac 97  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||   |  ||||||||| ||||||||||| ||  |||||||||||||    
T  4535782 cgaactgggtaaacaaattcttgtgttctctttcttccttttatctcttgctgttcgttttttttgtttggattatttgctacccacttgatttgattac 4535881  T
Q  98 ttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    ||| |||||||||||| || |||| || ||| |||||||| | |||||  |||| |||||||||||    
T  4535882 ttggtattaatttgctccacgcattaaattt-ttattggtctggtttttacaacgaattcacaaca 4535946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 10949266 - 10949148
Alignment:
Q  10 taaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatt 109  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||   | |||||||||||||||| ||||||||    
T  10949266 taaacaaattcttgtgttctccttcttccttttatctcttgctgttagtttttgtttgaattatttgctacgagcttgatttgattacttggtattaatt 10949167  T
Q  110 tgcttcatgcatcaagttt 128  Q
    |||| || |||||||||||    
T  10949166 tgctccacgcatcaagttt 10949148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 29913970 - 29913802
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgatta 96  Q
    |||||| ||||||||||||||||||||||    ||||||||  | |||||||||||||||  ||||||||| ||||||||||| ||| ||||||||||||    
T  29913970 cgaactgggtaaacaaattcttgtgttctttctctttcttctctctatctcttgctgttttattttgtttggattatttgctacccgcttgatttgatta 29913871  T
Q  97 cttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    |||| ||||||| |||| ||  |||||||||| |||||||| | |||||| |||| ||||||||||||||    
T  29913870 cttggtattaatctgctccacacatcaagtttgttattggtgtggttttctcaac-aattcacaacaatt 29913802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 10612793 - 10612624
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttct----tccttttatctcttgctgtttacttttg-tttgaattatttgctatccgtttgatttgatt 95  Q
    |||||| |||||||||||||||||||||||| |||    ||||||||||||||||| |||||||||| |||| |||||||||||  || |||||||||||    
T  10612793 cgaactgggtaaacaaattcttgtgttctctctctctcttccttttatctcttgctatttacttttgttttggattatttgctactcgcttgatttgatt 10612694  T
Q  96 acttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    |  || |||||||||||| || ||||||||||| |||||||| | |||||| |||| |||||| |||||||    
T  10612693 atctggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcataacaatt 10612624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 38003044 - 38003147
Alignment:
Q  9 gtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaat 108  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| ||  || ||||||||||||| |||||||    
T  38003044 gtaaacaaattcttgtgttctccttcttccttttatctcttgttgtttacttttgttt-aattatttgctacccactttatttgattacttggtattaat 38003142  T
Q  109 ttgct 113  Q
    |||||    
T  38003143 ttgct 38003147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 7418230 - 7418382
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgct-atccgtttgatttgattactt 99  Q
    |||||| ||||||||||| |||||||||||   ||||||||||| |||||||||||| ||||||||||| |||||  | | ||| |||||||||||||||    
T  7418230 cgaactgggtaaacaaatccttgtgttctc---cttccttttatatcttgctgtttatttttgtttgaaatattttgtcacccgcttgatttgattactt 7418326  T
Q  100 gatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaat 155  Q
      |||||||||| | || |||||||||||||||||||| | |||||| ||||||||    
T  7418327 tgtattaatttgttccacgcatcaagtttattattggtgtggttttcacaacaaat 7418382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 10094043 - 10093923
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  10094043 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccatgcatcaagttt-ttattggt 10093949  T
Q  138 atagttttcgcaacaaattcacaaca 163  Q
     | |||||| |||| |||||||||||    
T  10093948 gtggttttctcaacgaattcacaaca 10093923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 10200925 - 10200805
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  10200925 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccatgcatcaagttt-ttattggt 10200831  T
Q  138 atagttttcgcaacaaattcacaaca 163  Q
     | |||||| |||| |||||||||||    
T  10200830 gtggttttctcaacgaattcacaaca 10200805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 6303522 - 6303645
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  6303522 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 6303616  T
Q  138 atagttttcgcaacaaattcacaacaatt 166  Q
     | |||||| |||| ||||||||||||||    
T  6303617 gtggttttctcaacgaattcacaacaatt 6303645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 166
Target Start/End: Complemental strand, 10100044 - 10099921
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  10100044 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 10099950  T
Q  138 atagttttcgcaacaaattcacaacaatt 166  Q
     | |||||| |||| ||||||||||||||    
T  10099949 gtggttttctcaacgaattcacaacaatt 10099921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 5858716 - 5858874
Alignment:
Q  7 tggtaaacaaattcttgtgttctctttc----ttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgat 102  Q
    ||||||||||||||||||||||| | ||    ||||||||||||||||||||||  ||||||| || |||||||||| ||| |||||||||||||||| |    
T  5858716 tggtaaacaaattcttgtgttctttctccctcttccttttatctcttgctgttttattttgttgga-ttatttgctacccgcttgatttgattacttggt 5858814  T
Q  103 attaatttgcttcatgcatcaagtttattattggtatagttttcgcaa-caaattcacaaca 163  Q
    ||||||||||| || ||||||||||  |||||||| | |||||| ||| | |||||||||||    
T  5858815 attaatttgctccacgcatcaagtt--ttattggtgtggttttctcaatcgaattcacaaca 5858874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 16462393 - 16462494
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||| ||| || ||| |||||||||||||||| |||||||||||| || |||||||||    
T  16462393 tctctctcttccttttatctcttgctgtttatttttgtttggattaattgatacccgcttgatttgattacttggtattaatttgctccacgcatcaagt 16462492  T
Q  127 tt 128  Q
    ||    
T  16462493 tt 16462494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 29897664 - 29897526
Alignment:
Q  26 ttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaag 125  Q
    ||||||||||||  | ||||| |||||||||  ||||||||| ||||||||||| ||| |||||||||||| ||| ||||||| |||| ||  |||||||    
T  29897664 ttctctttcttctctctatctgttgctgttttattttgtttggattatttgctacccgcttgatttgattatttggtattaatctgctccacacatcaag 29897565  T
Q  126 tttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    ||| |||||||| | |||||| |||| ||||||||||||    
T  29897564 tttgttattggtgtggttttctcaacgaattcacaacaa 29897526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 22625960 - 22625826
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| |||||||||||||||||| |||||    ||||||| ||||||||||| ||| ||  |||||||||||| |||||||||||| ||  ||||||||    
T  22625960 tctctctcttccttttatctcttgttgttt----ttgtttggattatttgctacccgcttcttttgattacttggtattaatttgctccacacatcaagt 22625865  T
Q  127 ttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    || |||||||| | |||||| |||| ||||||||||||||    
T  22625864 tt-ttattggtgtggttttctcaacgaattcacaacaatt 22625826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 27544517 - 27544619
Alignment:
Q  59 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattca 158  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||  |||||||| | |||||| |||| ||||||    
T  27544517 ttttgtttggattatttgctacccgcttgatttgattacttgatattaatttgctcaacgcatcaagtt--ttattggtgtggttttctcaacgaattca 27544614  T
Q  159 caaca 163  Q
    |||||    
T  27544615 caaca 27544619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 54193426 - 54193557
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| ||||||||||||||||||||||||    ||||||| ||||||||||| ||| ||| |||||||||||| |||||||||||| || |||||||||    
T  54193426 tctctctcttccttttatctcttgctgttt----ttgtttggattatttgctacccgcttggtttgattacttggtattaatttgctccacgcatcaagt 54193521  T
Q  127 ttattattggtatagttttcgc-aacaaattcacaaca 163  Q
    |  |||||||| | |||||| | ||| |||||||||||    
T  54193522 t--ttattggtgtggttttctcaaacgaattcacaaca 54193557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 54188710 - 54188844
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| |||||||||||||||||| |||||    ||||||| ||||||||||| ||| ||| |||||||||||| |||||||||||| || ||||||| |    
T  54188710 tctctctcttccttttatctcttgttgttt----ttgtttggattatttgctacccgcttggtttgattacttggtattaatttgctccacgcatcaaat 54188805  T
Q  127 ttattattggtatagttttcgc-aacaaattcacaacaatt 166  Q
    |  |||||||| | |||||| | ||| ||||||||||||||    
T  54188806 t--ttattggtgtggttttctcaaacgaattcacaacaatt 54188844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13893630 - 13893700
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattat 73  Q
    |||||| |||||||| |||||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||    
T  13893630 cgaactgggtaaacatattcttgtgttctccttcttcc-tttatctcctgctgttta-ttttgtttgaattat 13893700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 11962448 - 11962287
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||     
T  11962448 cgaactgggtaaacaaattcttgtgttctccttcttccttttatctcttgttgtttacttttgtttgaattatttgctacccgcttgatttgattactta 11962349  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
     |||||||||||| || ||||||||||| |||||||| | |||||| |||| |||||||||||    
T  11962348 gtattaatttgctaca-gcatcaagttttttattggtgtggttttcacaacgaattcacaaca 11962287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 42238427 - 42238589
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||| ||||||||||||||||    
T  42238427 cgaactgggtaaacaaattcttgtgttctccttcttccttttatctcttgctgtttatttttgtttggattatttgctacccgcttgatttgattacttg 42238526  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
     |||||||||||| || ||||||||||| |||||||| | |||||  |||| ||||||||||||    
T  42238527 gtattaatttgctccacgcatcaagttt-ttattggtgtggtttttacaacgaattcacaacaa 42238589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 16093307 - 16093144
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||||||    
T  16093307 cgaactggataaacaaattcttgtgttctccttcttccttttatctcttgttgtttacttttgtttgaattatttgttattcgcttgatttgattacttg 16093208  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattcacaaca 163  Q
     ||||||||| || || |||||||||||||||||||| | | ||||| |||| |||||||||||    
T  16093207 gtattaatttactccacgcatcaagtttattattggtgtggtttttcacaacgaattcacaaca 16093144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 22673001 - 22673163
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct--ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattact 98  Q
    |||||| ||||||||||||||||||||||  || ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  22673001 cgaactgggtaaacaaattcttgtgttctttctctcttccttttatctcttgctgtttatttttgtttgaattatttgctacccgcttgatttgattact 22673100  T
Q  99 tgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    || |||||||||||| || ||||||||||  |||||||| | ||||||  ||| |||||||||||    
T  22673101 tggtattaatttgctccacgcatcaagtt--ttattggtgtggttttcttaacgaattcacaaca 22673163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 17841264 - 17841110
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| ||| || ||||||||||| |    
T  17841264 cgaactgggtaaacaaattattgtgttctccttcttccttttatctcttgctatttatttttgtttgaattatttgctacccgcttaatttgattactcg 17841165  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattc 157  Q
    ||||||||||||  || ||||||||||  |||||||| |||||||| |||| |||||    
T  17841164 atattaatttgccccacgcatcaagtt--ttattggtgtagttttcacaacgaattc 17841110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 28786571 - 28786733
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttactttt-gtttgaattatttgctatccgtttgatttgattactt 99  Q
    |||||| |||||||||||||||||||||||   ||||||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||| ||    
T  28786571 cgaactgggtaaacaaattcttgtgttctc---cttccttttatctcttgctgtttgctttttgtttgaattatttgctacccgcttgatttgattattt 28786667  T
Q  100 gatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    | |||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||||| ||||    
T  28786668 ggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaataatt 28786733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 20437119 - 20437259
Alignment:
Q  33 tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttatta 132  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||  |  |||||||||||||     
T  20437119 tcttccttttatctcttgttgtttacttttgtttgaattatttgctacccgcttgatttgattacttgatattaatttgctcaacacatcaagtttattg 20437218  T
Q  133 ttggtatagttttcgcaacaaattcacaacaattttaaata 173  Q
    ||||| |  ||||| |||| ||||||||||| ||| |||||    
T  20437219 ttggtgtgattttcacaacgaattcacaacactttcaaata 20437259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 1240595 - 1240760
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgttt-gaattatttgctatccgtttgatttgatta 96  Q
    |||||| |||||| ||||||||||||||| |||  |||||||||||||||||||| ||||||||||||| | ||||||||||| ||| ||||||||||||    
T  1240595 cgaactaggtaaataaattcttgtgttcttcttcttcttccttttatctcttgctatttacttttgttttggattatttgctacccgcttgatttgatta 1240694  T
Q  97 cttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    |||| |||||||||||| || ||||||||||| |||||||| | |||| | |||| |||||||||||    
T  1240695 cttggtattaatttgctccacgcatcaagttt-ttattggtgtggtttcctcaacgaattcacaaca 1240760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 166
Target Start/End: Original strand, 10627534 - 10627698
Alignment:
Q  2 gaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattat-ttgctatccgtttgatttgattacttg 100  Q
    ||||| |||||||| |||||||||||||| |||||||||| |||||||| |||||| ||||||||||||||  |||  | ||| ||||||||||| ||||    
T  10627534 gaactgggtaaacagattcttgtgttctccttcttccttt-atctcttgttgtttatttttgtttgaattaaattgtcacccgcttgatttgattgcttg 10627632  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
     | |||||||||| || |||||||||||||||||||| | |||||| |||  ||||||||||||||    
T  10627633 gttttaatttgctccacgcatcaagtttattattggtgtggttttcacaatgaattcacaacaatt 10627698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 25452662 - 25452798
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgatta 96  Q
    |||||| ||||||||||||||||||||||    || ||||||||||||||||||||||||    ||||||| ||||||||||| ||| ||||||||||||    
T  25452662 cgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgatta 25452757  T
Q  97 cttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||| |||||||||||| || ||||||||| | ||||||||    
T  25452758 cttggtattaatttgctccacgcatcaagtattttattggt 25452798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 40222932 - 40223099
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgt---ttacttttgtttgaattatttgctatccgtttgatttgattac 97  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||| |||   || |||||||||| ||||||||||| ||  |||||||||||||    
T  40222932 cgaactaggtaaacaaattattgtgttctctttcttccttttatctcttgttgttcattccttttgtttggattatttgctaccctcttgatttgattac 40223031  T
Q  98 ttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattcacaacaat 165  Q
    ||| ||||||||| || || ||||||| ||| |||||||| | | ||||  |||| |||||||||||||    
T  40223032 ttggtattaatttactccacgcatcaaattt-ttattggtgtggttttttacaacgaattcacaacaat 40223099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 25445663 - 25445799
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgatta 96  Q
    |||||| ||||||||||||||||||||||    || |||||||||||||||||| |||||    ||||||| ||||||||||| ||| ||||||||||||    
T  25445663 cgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgatgttt----ttgtttggattatttgctacccgcttgatttgatta 25445758  T
Q  97 cttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||| |||||||||||| || ||||||||| | ||||||||    
T  25445759 cttggtattaatttgctccacgcatcaagtattttattggt 25445799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 35385434 - 35385302
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| ||||||||||||||||||    ||  ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || |||||||||    
T  35385434 tctctctcttccttttatctcttg----ttgattttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagt 35385339  T
Q  127 ttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    || |||||||| |||||||| |||  ||||||||||||    
T  35385338 tt-ttattggtgtagttttctcaatgaattcacaacaa 35385302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 163
Target Start/End: Original strand, 1171020 - 1171142
Alignment:
Q  36 tccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattg 135  Q
    ||||||||||||||||||     ||||||||| |||| |||||| ||| ||| ||||||||||||||||||||||||| ||  |||||||||| ||||||    
T  1171020 tccttttatctcttgctg----gttttgtttggattaattgctacccgcttgttttgattacttgatattaatttgctccacacatcaagttt-ttattg 1171114  T
Q  136 gtatagttttcgcaacaaattcacaaca 163  Q
    || | |||||| |||| |||||||||||    
T  1171115 gtgtggttttctcaacgaattcacaaca 1171142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 31782465 - 31782308
Alignment:
Q  7 tggtaaacaaattcttgtgttctctttcttccttttatctcttgctg-tttacttttgtttgaattat-ttgctatccgtttgatttgattacttgatat 104  Q
    ||||||||| |||||||||||||| |||| |||||||||| |||||| |||| ||||||||||||||| |||  | ||| ||||||||||| ||||   |    
T  31782465 tggtaaacagattcttgtgttctccttctgccttttatctgttgctgttttatttttgtttgaattatattgtcacccgcttgatttgatttcttg--gt 31782368  T
Q  105 taatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    | || |||| ||  |||||||||  ||||||||||  |||| ||||||||||||||||||||    
T  31782367 ttatatgctccacacatcaagtt--ttattggtatgatttttgcaacaaattcacaacaatt 31782308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 2297979 - 2297849
Alignment:
Q  27 tctctttcttcctttt-atctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaag 125  Q
    ||||| |||||||||| ||||||||||||||     |||||| ||||||||||| ||| |||||||||||||||| ||||||||| || || ||||||||    
T  2297979 tctctctcttcctttttatctcttgctgttt-----tgtttggattatttgctacccgcttgatttgattacttggtattaatttactccacgcatcaag 2297885  T
Q  126 tttattattggtatagttttcgcaacaaattcacaaca 163  Q
    ||  || ||||| | |||||| |||| |||||||||||    
T  2297884 tt--ttgttggtgtggttttctcaacgaattcacaaca 2297849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 26406481 - 26406409
Alignment:
Q  1 cgaacttggtaaacaaattctt-gtgttctctttcttccttttatctcttgctgtttacttttgtttgaattat 73  Q
    |||||| ||||||||||||||| |||||||| |||||||||| ||||||||||||||| ||||| |||||||||    
T  26406481 cgaactaggtaaacaaattctttgtgttctccttcttccttt-atctcttgctgtttatttttgcttgaattat 26406409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 4144698 - 4144543
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4144698 cgaactgggtaaacaaattcttgtgttctccttcttccttt-atctcttgctgtttacttttgtttgaattatttgctatccgcttgatttgattacttg 4144600  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattc 157  Q
     |||||||||||| || | |||||| ||||||||||| | |||||| |||| |||||    
T  4144599 gtattaatttgctccacgtatcaagattattattggtgtggttttcacaacgaattc 4144543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 25134245 - 25134400
Alignment:
Q  8 ggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaa 107  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||  ||||||||||||||||| ||| ||| |||||||||||| ||||||||||    
T  25134245 ggtaaacaaattcttgtgttctccttcttccttttatcttttgctgtttgtttttgtttgaattatttactacccgcttgatttgattatttgatattaa 25134344  T
Q  108 tttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    ||| ||||| ||||||| ||| |||||||| | |||||| |||| ||||||||||||    
T  25134345 tttacttcacgcatcaaattt-ttattggtgtggttttcacaacgaattcacaacaa 25134400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 21353363 - 21353195
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgatta 96  Q
    |||||| ||||||||||||||||||||||    ||||||||||| |||||||||||||||  ||||||||| ||||||||||| ||  ||||||| ||||    
T  21353363 cgaactgggtaaacaaattcttgtgttctttctctttcttccttctatctcttgctgttttattttgtttggattatttgctacccacttgatttaatta 21353264  T
Q  97 cttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaat 165  Q
    |||  |||||||||||| || ||||||||||| |||||||| | |||||| |||| |||||| ||||||    
T  21353263 cttagtattaatttgctccacgcatcaagtttgttattggtgtggttttctcaacgaattcataacaat 21353195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 2393298 - 2393132
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgat 94  Q
    |||||| | ||||||||||||||||||||    |||  ||||||||||||||||||||||||||||| ||||| |||| |||||||||  ||||||||||    
T  2393298 cgaactggataaacaaattcttgtgttcttcttcttcttcttccttttatctcttgctgtttacttt-gtttggattaattgctatccacttgatttgat 2393200  T
Q  95 tacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    |||||| |||||||||||| || |||| |||||  |||||||| | |||||| |||| ||||||||||||    
T  2393199 tacttggtattaatttgctccacgcataaagtt--ttattggtgtggttttcacaacgaattcacaacaa 2393132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 9521936 - 9522059
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  9521936 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 9522030  T
Q  138 atagttttcgcaacaaattcacaacaatt 166  Q
     | |||||| |||| ||||||||||||||    
T  9522031 gtggttttctcaacgaattcacaacaatt 9522059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 2401236 - 2401071
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattac 97  Q
    |||||| |||||||||||||||||||||| |||  |||||||||||||||||| |||||||||| ||||| |||| ||| |||||  |||||||||||||    
T  2401236 cgaactgggtaaacaaattcttgtgttcttcttcttcttccttttatctcttgttgtttacttt-gtttggattaattgttatccacttgatttgattac 2401138  T
Q  98 ttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    ||| ||||||||||||  | ||||||||||  ||||| || |  ||||| |||| ||||||||||||||    
T  2401137 ttggtattaatttgctctacgcatcaagtt--ttatttgtgtgattttcacaacgaattcacaacaatt 2401071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 9526666 - 9526798
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| ||||||||||||||||||||||||     |||||| ||||||||||| ||| |||||||||||||||| |||||||||||| ||  ||||||||    
T  9526666 tctctctcttccttttatctcttgctgttt-----tgtttggattatttgctacccgcttgatttgattacttgttattaatttgctccacacatcaagt 9526760  T
Q  127 ttattattggtat-agttttcgcaacaaattcacaacaat 165  Q
    |  |||||||| | | ||||| |||| |||||||||||||    
T  9526761 t--ttattggtgtgatttttctcaacgaattcacaacaat 9526798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 2232822 - 2232926
Alignment:
Q  59 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattc 157  Q
    ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| ||  |||||||||| |||||||| | | ||||| |||| |||||    
T  2232822 ttttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacacatcaagttt-ttattggtgtggtttttctcaacgaattc 2232920  T
Q  158 acaaca 163  Q
    ||||||    
T  2232921 acaaca 2232926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 3091120 - 3090957
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattat-ttgctatccgtttgatttgattactt 99  Q
    |||||| | |||||| |||||||||||||  ||||||| ||||||||||| | |||| ||||||||||||||| |||  ||||| ||||||||||| |||    
T  3091120 cgaactggataaacagattcttgtgttcttcttcttccctttatctcttgatatttatttttgtttgaattatattgtcatccgcttgatttgatttctt 3091021  T
Q  100 gatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    | | || ||||||| ||  ||| || ||| |||||||| | ||||| ||||| ||||||||||||||    
T  3091020 ggt-tttatttgctccacacatgaaattt-ttattggtgt-gtttttgcaacgaattcacaacaatt 3090957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 14997209 - 14997281
Alignment:
Q  1 cgaacttggtaaacaaattctt-gtgttctctttcttccttttatctcttgctgtttacttttgtttgaattat 73  Q
    |||||| |||||||||||| || |||||||||||||||| ||||||| |||||||||| ||||| |||||||||    
T  14997209 cgaactaggtaaacaaattatttgtgttctctttcttcc-tttatctattgctgtttatttttgcttgaattat 14997281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 17799439 - 17799277
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  17799439 cgaactgggtaaacaaattcttgtgttctccttcttccttttatctcttgttgtttacttttgtttgaattatttgctacccgcttgatttgattacttg 17799340  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
     ||||||||| |||||   ||||||||| |||||||| | |||||| |||| ||||||||||||    
T  17799339 gtattaatttacttcacatatcaagttt-ttattggtgtggttttcacaacgaattcacaacaa 17799277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 3276465 - 3276626
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  3276465 cgaactgggtaaacaaattcttgtgttcttcttcttccttttatctcttgctgtttacttttgtttggattatttgctacccgcttgatttgattacttg 3276564  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
     |||||||||||| || ||||||||||| |||||||| | |||||  |||  |||||||||||    
T  3276565 ttattaatttgctccacgcatcaagttt-ttattggtgtggttttaacaaggaattcacaaca 3276626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 21034036 - 21034173
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttactttt-gtttgaattatttgctatccgtttgatttgattactt 99  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| ||| |||||||||||||||    
T  21034036 cgaactgggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttattttggattatttgctacccgcttgatttgattactt 21034135  T
Q  100 gatattaatttgcttcatgcatcaagtttattattggt 137  Q
    | |||||||||||| || ||||||||||| ||||||||    
T  21034136 ggtattaatttgctccacgcatcaagttttttattggt 21034173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 26268238 - 26268084
Alignment:
Q  9 gtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaat 108  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||| ||||| || |||||||    
T  26268238 gtaaacaaattcttgtgttctacttcttccttttatctcttgctgtttacttttgtttgaattattttctaccagcttgatttaattacatggtattaat 26268139  T
Q  109 ttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    ||||| || |||||||||||||||||||| | ||||||  ||| |||||||||||    
T  26268138 ttgctccacgcatcaagtttattattggtgtggttttcagaacgaattcacaaca 26268084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 23179576 - 23179410
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgat 94  Q
    |||||| ||||||||||||||||||||||    |||  ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  23179576 cgaactgggtaaacaaattcttgtgttcttcttcttcttcttccttttatctcttgctgtttacttttgtttgaattatttgctacccgcttgatttgat 23179477  T
Q  95 tacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    |||||| |||||||||||| || ||||||||||  |||||||| | |||||| |||| |||||||||||    
T  23179476 tacttggtattaatttgctccacgcatcaagtt--ttattggtgtggttttcacaacgaattcacaaca 23179410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 33032821 - 33032973
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| |||||| ||| | |||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||  || ||||||||||||||||    
T  33032821 cgaactgggtaaaaaaaattttgtgttctccttcttccttttatctcttgccgtttacttttgttttaattatttgctactcgcttgatttgattacttg 33032920  T
Q  101 atattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaa 153  Q
    |||||||||||||  ||||||||||||| |||||||| | |||||| ||||||    
T  33032921 atattaatttgctctatgcatcaagttttttattggtgtcgttttcacaacaa 33032973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 9021122 - 9020955
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgatta 96  Q
    |||||| ||||||||||||||||||||||    || ||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||    
T  9021122 cgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgctgtttacttttgtttggattatttgctacccgcttgatttgatta 9021023  T
Q  97 cttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaat 165  Q
    |||| |||||||||||| || |||| |||| | |||||||| | |||||| | ||||||||||||||||    
T  9021022 cttggtattaatttgctccacgcattaagtct-ttattggtgtggttttctcgacaaattcacaacaat 9020955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 28890965 - 28891098
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| |||||||||||||| |||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| ||||||||||||    
T  28890965 tctctctcttccttttatctgttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccatgcatcaagt 28891060  T
Q  127 ttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    |  |||||||| | |||||| |||| ||||||||||||||    
T  28891061 t--ttattggtgtggttttctcaacgaattcacaacaatt 28891098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 28895702 - 28895834
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| ||||||||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || |||||||||    
T  28895702 tctctctcttccttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagt 28895797  T
Q  127 ttattattggtatagttttcgcaacaaattcacaacaat 165  Q
    |  |||||||| | |||||| |||| |||||||||||||    
T  28895798 t--ttattggtgtggttttctcaacgaattcacaacaat 28895834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 4812453 - 4812336
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  4812453 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 4812359  T
Q  138 atagttttcgcaacaaattcaca 160  Q
     | |||||| |||| ||||||||    
T  4812358 gtggttttctcaacgaattcaca 4812336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 590961 - 591126
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctt-----tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgatt 95  Q
    |||||| |||||| ||||||||||||||| ||     ||||||||||||||||||||||||  |||| || || |||||||||| ||| |||||||||||    
T  590961 cgaactgggtaaataaattcttgtgttcttttctctctcttccttttatctcttgctgttttattttattgga-ttatttgctacccgcttgatttgatt 591059  T
Q  96 acttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    ||||| |||||||||  | || ||||||| ||| |||||||| | |||||| |||| |||||||||||    
T  591060 acttggtattaattttttccacgcatcaaattt-ttattggtgtggttttctcaacgaattcacaaca 591126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 16757242 - 16757107
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| ||| || |||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || |||||||||    
T  16757242 tctctctctcccctttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagt 16757147  T
Q  127 ttattattggtatag-ttttcgcaacaaattcacaacaatt 166  Q
    || |||||||| | | ||||| |||| ||||||||||||||    
T  16757146 tt-ttattggtgtggtttttctcaacgaattcacaacaatt 16757107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 28328135 - 28328242
Alignment:
Q  59 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattc 157  Q
    ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| |||||||| | | ||||| |||| |||||    
T  28328135 ttttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattc 28328233  T
Q  158 acaacaatt 166  Q
    |||||||||    
T  28328234 acaacaatt 28328242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 40 - 163
Target Start/End: Complemental strand, 16752493 - 16752374
Alignment:
Q  40 tttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtat 139  Q
    |||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| |||||||| |    
T  16752493 tttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgt 16752399  T
Q  140 ag-ttttcgcaacaaattcacaaca 163  Q
     | ||||| |||| |||||||||||    
T  16752398 ggtttttctcaacgaattcacaaca 16752374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 25684852 - 25684972
Alignment:
Q  39 ttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggta 138  Q
    |||||| |||||||||||   |||||||| ||||||||||| ||  ||| |||||||||||| |||||||||||| || ||||||||||| ||||||||     
T  25684852 ttttatttcttgctgttt---tttgtttggattatttgctacccacttgttttgattacttggtattaatttgctccacgcatcaagttt-ttattggtg 25684947  T
Q  139 tagttttcgcaacaaattcacaaca 163  Q
    | |||||| |||| |||||||||||    
T  25684948 tggttttctcaacgaattcacaaca 25684972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 28332858 - 28332962
Alignment:
Q  59 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattc 157  Q
    ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| |||||||| | | ||||| |||| |||||    
T  28332858 ttttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattc 28332956  T
Q  158 acaaca 163  Q
    ||||||    
T  28332957 acaaca 28332962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 30423389 - 30423453
Alignment:
Q  8 ggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattat 73  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  30423389 ggtaaacaaattcttgtgttctccttcttcc-tttatctcttgctgtttatttttgtttgaattat 30423453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 29554803 - 29554705
Alignment:
Q  63 gtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaac 162  Q
    ||||| ||||||||||| | | |||||||||||||||||||||||||| || || ||||||||  |||||||||| | |||||| |||| ||||||||||    
T  29554803 gtttggattatttgctaccagcttgatttgattacttgatattaatttactccacgcatcaag--tattattggtgtggttttctcaacgaattcacaac 29554706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 4823622 - 4823548
Alignment:
Q  90 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    ||||||||||| ||||||||| || ||  ||||||||||  ||||||| | |||||| |||| ||||||||||||||    
T  4823622 ttgattacttggtattaattttctccacacatcaagttt--tattggtgtggttttctcaacgaattcacaacaatt 4823548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 19701898 - 19701756
Alignment:
Q  21 ttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgca 120  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | || |||    
T  19701898 ttgtgttctctttcttccttttatctcttgttgtttacttttgtttgaattatttgctatccgtttgatttgattacttggt-ttaatttgttccacgca 19701800  T
Q  121 tcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    ||||||||||||||||| | |||||| |||| ||||||||||||    
T  19701799 tcaagtttattattggtgtggttttcacaacgaattcacaacaa 19701756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 12166161 - 12166007
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttctt-ccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattactt 99  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||||    
T  12166161 cgaactgggtaaacaaattcttgtgttctccttctttccttttatctcttgtcgtttacttttgtttgaattatttgctacccgcttgatttgattactt 12166062  T
Q  100 gatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaa 154  Q
    | |||||||||||| || |||||||||||||||||||| | |||||| |||||||    
T  12166061 ggtattaatttgctccacgcatcaagtttattattggtgtggttttcacaacaaa 12166007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 13467482 - 13467318
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttcctttt--atctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattact 98  Q
    |||||| ||||||||||||||||||||||| |||||||||||  ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||    
T  13467482 cgaactaggtaaacaaattcttgtgttctccttcttccttttttatctcttactgtttacttttgtttgaatcatttgctacccgtttgatttgattact 13467383  T
Q  99 tgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    || ||||||||| || || ||||||| ||| |||||||| | |||||| |||| |||||||||||    
T  13467382 tggtattaatttactccacgcatcaaattttttattggtgtggttttcacaacgaattcacaaca 13467318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 25941836 - 25942003
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattac 97  Q
    |||||| |||||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||||||||||    
T  25941836 cgaactgggtaaacaaattcttgtgttcttcttcttcttccttttatctcttgctgtttatttttgtttggattatttgctacccgcttgatttgattac 25941935  T
Q  98 ttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    ||| |||||||||| | || ||||||||||| |||||||| | |||||| |||| ||||||||||||||    
T  25941936 ttggtattaatttgttccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaatt 25942003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 3577505 - 3577338
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgat 94  Q
    |||||| ||||||||||||||||||||||    |||  ||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||    
T  3577505 cgaactgggtaaacaaattcttgtgttcttcttcttcttcttccttttatctcttgctgtttacttttgtttggattatttgctacccgcttgatttgat 3577406  T
Q  95 tacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    |||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| |||||||||||    
T  3577405 tacttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaaca 3577338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 26643341 - 26643468
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  26643341 cgaactgggtaaacaaattcttgtgttctccttcttccttctatctcttactgtttacttttgtttgaattattttctatccgcttgatttcattacttg 26643440  T
Q  101 atattaatttgcttcatgcatcaagttt 128  Q
     |||||||||||| || |||||||||||    
T  26643441 gtattaatttgctccacgcatcaagttt 26643468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 26749307 - 26749434
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttg 100  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  26749307 cgaactgggtaaacaaattcttgtgttctccttcttccttctatctcttactgtttacttttgtttgaattattttctatccgcttgatttcattacttg 26749406  T
Q  101 atattaatttgcttcatgcatcaagttt 128  Q
     |||||||||||| || |||||||||||    
T  26749407 gtattaatttgctccacgcatcaagttt 26749434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 17694867 - 17694698
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgttt-gaattatttgctatccgtttgatttgatt 95  Q
    |||||| ||||||||||||||||||||||    || |||||||||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||    
T  17694867 cgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctattgctgtttacttttgttttggattatttgctatccgcttgatttgatt 17694768  T
Q  96 acttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    ||||| |||||||||||| ||  |||||||||| |||||||| | |||||| |||| ||||||||||||||    
T  17694767 acttggtattaatttgctccacacatcaagttt-ttattggtgtggttttctcaacgaattcacaacaatt 17694698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 33215994 - 33216160
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtt---tacttttgtttgaattatttgctatccgtttgatttgattac 97  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||   |  ||||||||| ||||||||||| ||| ||||| |||||||    
T  33215994 cgaactgggtaaacaaattcttgtgttctctttcttccgtttatctcttgctgttcgtttattttgtttggattatttgctacccgcttgatatgattac 33216093  T
Q  98 ttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    ||| |||||||||||| || ||||||||||| |||||||| | |||||  |||  ||||||||||||    
T  33216094 ttggtattaatttgctccacgcatcaagttttttattggtgtggtttttacaaggaattcacaacaa 33216160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 22351868 - 22351701
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttg-tttgaattatttgctatccgtttgatttgatta 96  Q
    |||||| |||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||| |||| |||||||| || ||| ||||||||||||    
T  22351868 cgaactgggtaaacaaattcttgtgttcttcttcttcttccttttatctcttgctgtttacttttgttttggattatttgttacccgcttgatttgatta 22351769  T
Q  97 cttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    |||| |||||||||||| ||  |||||||||  |||||||| |  ||||  |||| ||||||||||||||    
T  22351768 cttggtattaatttgctccacacatcaagtt--ttattggtgtgatttttacaacgaattcacaacaatt 22351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 25465914 - 25465754
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttactttt--gtttgaattatttgctatccgtttgatttgattact 98  Q
    |||||| |||||||||||| |||||||||   ||||||||||||||||||||||||  ||||  ||||| |||||||||||  || ||||||||||||||    
T  25465914 cgaactgggtaaacaaattattgtgttct---tcttccttttatctcttgctgttttattttttgtttggattatttgctacacgcttgatttgattact 25465818  T
Q  99 tgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    || |||||||||||| || ||||||||||| |||||||| | |||||| |||| |||||||||||    
T  25465817 tggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaaca 25465754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 22342816 - 22342651
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct---ctttcttccttttatctcttgctgtttacttttgtt-tgaattatttgctatccgtttgatttgatta 96  Q
    |||||| ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||    
T  22342816 cgaactgggtaaacaaattcttgtgttcttcatcttcttccttttatctcttgctgtttacttttgttatggattatttgctacccgcttgatttgatta 22342717  T
Q  97 cttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
     ||| |||||||||||| ||| |||||||||  |||||||| |  ||||  |||| ||||||||||||    
T  22342716 tttggtattaatttgctccatacatcaagtt--ttattggtgtgatttttacaacgaattcacaacaa 22342651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 13883685 - 13883806
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||    ||||||| ||||||||||| |||||||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  13883685 cttttatctcttgctgttt----ttgtttggattatttgctacccgtttgatttgattacttggtattaatttgctccacgcatcaagttttttattggt 13883780  T
Q  138 atagttttcgcaacaaattcacaaca 163  Q
     | |||||| |||| |||||||||||    
T  13883781 gtggttttctcaacgaattcacaaca 13883806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 31248664 - 31248544
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  31248664 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 31248570  T
Q  138 atagttttcgcaacaaattcacaaca 163  Q
     | |||||| |||| |||||||||||    
T  31248569 gtggttttctcaacgaattcacaaca 31248544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 17038436 - 17038541
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| |||||||||||| |||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| ||||||||||||    
T  17038436 tctctctcttccttttatttcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccatgcatcaagt 17038531  T
Q  127 ttattattggt 137  Q
    || ||||||||    
T  17038532 tt-ttattggt 17038541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 13878938 - 13879073
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| |||| |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || |||||||||    
T  13878938 tctctctctttcttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagt 13879033  T
Q  127 ttattattggtatag-ttttcgcaacaaattcacaacaatt 166  Q
    || || ||||| | | ||||| |||| ||||||||||||||    
T  13879034 tt-tttttggtgtggtttttctcaacgaattcacaacaatt 13879073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 35201276 - 35201156
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||| ||    
T  35201276 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttg-tattaatttgctccacgcatcaagttt-ttattagt 35201183  T
Q  138 atagttttcgcaacaaattcacaacaa 164  Q
     | |||||| |||| ||||||||||||    
T  35201182 gtggttttctcaacgaattcacaacaa 35201156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 16786162 - 16786265
Alignment:
Q  59 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattca 158  Q
    ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||  | |||||| | | |||||| |||||||||||    
T  16786162 ttttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaag--tcttattgttgtggttttctcaacaaattca 16786259  T
Q  159 caacaa 164  Q
    ||||||    
T  16786260 caacaa 16786265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 17066019 - 17066179
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattat-ttgctatccgtttgatttgattactt 99  Q
    |||||| | |||||| ||| ||| |||||| |||||||||| ||||||||||||||| ||||||||||||||| |||  | | | ||||||||||| |||    
T  17066019 cgaactggataaacagattattgggttctccttcttccttt-atctcttgctgtttatttttgtttgaattatattgtcaccagcttgatttgattgctt 17066117  T
Q  100 gatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaa 161  Q
    ||| ||||||| || || |||||| |||| |||||||| | |||||| |||  |||||||||    
T  17066118 gattttaatttactccacgcatcaggttttttattggtgtggttttcacaatgaattcacaa 17066179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 164
Target Start/End: Complemental strand, 26887199 - 26887076
Alignment:
Q  36 tccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattg 135  Q
    ||||||||||||||||||     ||||||||| |||| |||||| ||| ||| ||||||||||||||||||||||||| ||  |||||||||| ||||||    
T  26887199 tccttttatctcttgctg----gttttgtttggattaattgctacccgcttgttttgattacttgatattaatttgctccacacatcaagttt-ttattg 26887105  T
Q  136 gtatagttttcgcaacaaattcacaacaa 164  Q
    || | |||||| | || ||||||||||||    
T  26887104 gtgtggttttctcgacgaattcacaacaa 26887076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 5165771 - 5165690
Alignment:
Q  85 ttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||||||| |  ||||| |||| ||||||| ||||||    
T  5165771 ttgatttgattacttggtattaatttgctccacgcatcaagtttattattggtgtgtttttcacaacgaattcacgacaatt 5165690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 30987475 - 30987389
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagttt 128  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||  |||||||||||||||| |||||||||||| || |||||||||||    
T  30987475 cttttatctcttgctgttt----ttgtttggattatttgctacccacttgatttgattacttggtattaatttgctccacgcatcaagttt 30987389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 37170761 - 37170605
Alignment:
Q  8 ggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaa 107  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||| ||||||    
T  37170761 ggtaaacaaattattgtgttctccttcttccttttatctcttgctgtttacttttgtttgaattatttactacccacttgatttgattacttggtattaa 37170662  T
Q  108 tttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaat 165  Q
    |||||| || ||||||||||| |||||||| |  ||||| |||| |||||||||||||    
T  37170661 tttgctccacgcatcaagttt-ttattggtgtgattttcacaacgaattcacaacaat 37170605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 20054780 - 20054607
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctt--tcttccttttatctcttgctgtttacttttgttt-gaattatttgctatccgtttgatttga 93  Q
    |||||| ||||||||||||||||||||||    |||  |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||    
T  20054780 cgaactgggtaaacaaattcttgtgttcttcttcttcttcttccttttatctcttgctgtttacttttgttttggattatttgctatccgcttgatttga 20054681  T
Q  94 ttacttgatattaatttgcttcatgcatcaag-tttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    ||||||| |||||||||||| || |||||||| ||| |||||||| | |||||| |||| ||||||||||||||    
T  20054680 ttacttggtattaatttgctccacgcatcaagtttttttattggtgtggttttctcaacgaattcacaacaatt 20054607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 27517654 - 27517482
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattac 97  Q
    ||||||||||||||||||||||||||||| |||  |||||| ||||||||||| |||||| ||||||||| ||||||||||| ||| |||||||||||||    
T  27517654 cgaacttggtaaacaaattcttgtgttcttcttcttcttccctttatctcttgttgtttatttttgtttggattatttgctacccgcttgatttgattac 27517555  T
Q  98 ttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaattttaaat 172  Q
    ||| |||||||||||| || ||||||||||  |||||||| | |||||| |||| |||||||||||  |||||||    
T  27517554 ttggtattaatttgctccacgcatcaagtt--ttattggtgtggttttctcaacgaattcacaacagatttaaat 27517482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 20050036 - 20049866
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctt--tcttccttttatctcttgctgtttacttttgttt-gaattatttgctatccgtttgatttga 93  Q
    |||||| ||||||||||||||||||||||    |||  |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||    
T  20050036 cgaactgggtaaacaaattcttgtgttcttcttcttcttcttccttttatctcttgctgtttacttttgttttggattatttgctatccgattgatttga 20049937  T
Q  94 ttacttgatattaatttgcttcatgcatcaag-tttattattggtatagttttcgcaacaaattcacaaca 163  Q
    ||||||| |||||||||||| || |||||||| ||| |||||||| | |||||| |||| |||||||||||    
T  20049936 ttacttggtattaatttgctccacgcatcaagtttttttattggtgtggttttctcaacgaattcacaaca 20049866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 22717217 - 22717080
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||| |||||| ||| |||||||||||||||| |||||||||||| ||||||||||||    
T  22717217 tctctctcttccttttatctcttgctgtttatttttgtttggattaattgctacccgcttgatttgattacttggtattaatttgctccatgcatcaagt 22717118  T
Q  127 ttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    |  |||||||| | |||||| |||| ||||||||||||||    
T  22717117 t--ttattggtgtggttttctcaacgaattcacaacaatt 22717080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 38191179 - 38191346
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttactttt------gtttgaattatttgctatccgtttgatttgat 94  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||  ||||      ||||||||||||||||| ||| ||||||||||    
T  38191179 cgaactgggtaaacaaattcttgtgttctccttcttccttttatctcttgctgtttgtttttttttttgtttgaattatttgctacccgcttgatttgat 38191278  T
Q  95 tacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 164  Q
    |||||| |||||||||||| || |||| |||||  |||||||| |  ||||| |||| ||||||||||||    
T  38191279 tacttggtattaatttgctccacgcattaagtt--ttattggtgtgattttcacaacgaattcacaacaa 38191346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 2736404 - 2736539
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| ||||||||||||||||||||||||  ||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||  | |||||||||    
T  2736404 tctctctcttccttttatctcttgctgttt--ttttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctctacgcatcaagt 2736501  T
Q  127 ttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    |  |||||||| | |||||| |||| ||||||||||||||    
T  2736502 t--ttattggtgtggttttctcaacgaattcacaacaatt 2736539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 17943702 - 17943867
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgatta 96  Q
    |||||| ||||||||||||||||||||||    ||||||||| | |||||||||||||||  ||| ||||| ||||||||||| ||| || |||||||||    
T  17943702 cgaactaggtaaacaaattcttgtgttctttctctttcttccctctatctcttgctgttttattt-gtttggattatttgctacccgcttaatttgatta 17943800  T
Q  97 cttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 163  Q
    |||| |||||||||||| || ||||||||||| |||||||| |  ||||| |||| |||||||||||    
T  17943801 cttggtattaatttgctccacgcatcaagtttgttattggtgtgtttttctcaacgaattcacaaca 17943867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 22712508 - 22712374
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||| ||| || ||| |||||||||||||||| |||||||||||| || |||||||||    
T  22712508 tctctctcttccttttatctcttgctgtttatttttgtttggattaattgatacccgcttgatttgattacttggtattaatttgctccacgcatcaagt 22712409  T
Q  127 ttattattggtatagttttcgcaacaaattcacaaca 163  Q
    |  |||||||| | |||||| |||| |||||||||||    
T  22712408 t--ttattggtgtggttttctcaacgaattcacaaca 22712374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 12781236 - 12781075
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttactttt-gtttgaattatttgctatccgtttgatttgatt 95  Q
    |||||| |||||||||||| |||||||||    || ||||||||||||||||||   | ||||||| ||||| ||||||||||| ||| |||||||||||    
T  12781236 cgaactaggtaaacaaattattgtgttctttctctctcttccttttatctcttg---tctactttttgtttggattatttgctacccgcttgatttgatt 12781140  T
Q  96 acttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaa 161  Q
    ||||| |||||||||||| || ||||||||||| |||||||||| |||||| |||| |||||||||    
T  12781139 acttggtattaatttgctccacgcatcaagttt-ttattggtatggttttctcaacgaattcacaa 12781075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 33670949 - 33670817
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| ||||||||||| ||||||||||||   |||||||| ||||||||||| ||| |||||||||||||||| |||||||||| | || |||||||||    
T  33670949 tctctctcttccttttacctcttgctgttt---tttgtttggattatttgctacccgcttgatttgattacttggtattaatttgatccacgcatcaagt 33670853  T
Q  127 ttattattggtatagttttcgcaacaaattcacaaca 163  Q
    || |||||||| | |||||| |||| |||||||||||    
T  33670852 tt-ttattggtgtggttttctcaacgaattcacaaca 33670817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 30479161 - 30479322
Alignment:
Q  1 cgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattac 97  Q
    |||||| ||||||||||||||||| |||| |||  ||||||||||||||||||||||||| ||||||||| ||||||||||| ||  ||||||||||||     
T  30479161 cgaactgggtaaacaaattcttgtattcttcttcttcttccttttatctcttgctgtttatttttgtttggattatttgctacccacttgatttgattat 30479260  T
Q  98 ttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaa 161  Q
    ||  | ||||||| || || ||||||||  |||||||| | | |||||| ||||||||||||||    
T  30479261 tttgtgttaatttactccacgcatcaag--tattattgatgtggttttctcaacaaattcacaa 30479322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 2741140 - 2741261
Alignment:
Q  27 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 126  Q
    ||||| ||||||||||||||||||||||||  ||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||  | |||||||||    
T  2741140 tctctctcttccttttatctcttgctgttt--ttttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctctacgcatcaagt 2741237  T
Q  127 ttattattggtatagttttcgcaaca 152  Q
    |  |||||||| | |||||| |||||    
T  2741238 t--ttattggtgtggttttctcaaca 2741261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 45679933 - 45680057
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  45679933 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 45680027  T
Q  138 atag-ttttcgcaacaaattcacaacaatt 166  Q
     | | ||||| |||| ||||||||||||||    
T  45680028 gtggtttttctcaacgaattcacaacaatt 45680057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 39680257 - 39680380
Alignment:
Q  40 tttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtat 139  Q
    |||| ||||||||||||   |||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| |||||||| |    
T  39680257 tttaactcttgctgttt---tttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgt 39680352  T
Q  140 ag-ttttcgcaacaaattcacaacaatt 166  Q
     | ||||| |||| ||||||||||||||    
T  39680353 ggtttttctcaacgaattcacaacaatt 39680380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 39687201 - 39687321
Alignment:
Q  40 tttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtat 139  Q
    |||| ||||||||||||   |||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| |||||||| |    
T  39687201 tttaactcttgctgttt---tttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgt 39687296  T
Q  140 ag-ttttcgcaacaaattcacaaca 163  Q
     | ||||| |||| |||||||||||    
T  39687297 ggtttttctcaacgaattcacaaca 39687321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 17462664 - 17462768
Alignment:
Q  59 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattca 158  Q
    |||||| || |||| |||||| ||| |||||||||||||| | |||||||||||| ||  |||||||||| |||||||| | |||||| |||| ||||||    
T  17462664 ttttgtgtggattaattgctacccgcttgatttgattactcggtattaatttgctccacacatcaagttt-ttattggtgtggttttctcaacgaattca 17462762  T
Q  159 caacaa 164  Q
    ||||||    
T  17462763 caacaa 17462768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 28458841 - 28458770
Alignment:
Q  3 aacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattattt 75  Q
    |||| ||||||||| ||||||||||||| ||| |||||| ||| ||||||||||| ||||| |||||||||||    
T  28458841 aactgggtaaacaatttcttgtgttctccttcgtccttt-atcccttgctgtttatttttgcttgaattattt 28458770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 17704 - 17824
Alignment:
Q  38 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 137  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  17704 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 17798  T
Q  138 atagttttcgcaacaaattcacaaca 163  Q
     | |||||| |||| |||||||||||    
T  17799 gtggttttctcaacgaattcacaaca 17824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 163
Target Start/End: Original strand, 231321 - 231445
Alignment:
Q  33 tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttatta 132  Q
    |||| |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||  |||    
T  231321 tctttcttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagtt--tta 231414  T
Q  133 ttggtatagttttcgcaacaaattcacaaca 163  Q
    ||||| | |||||| |||| |||||||||||    
T  231415 ttggtgtggttttctcaacgaattcacaaca 231445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 3022 - 2918
Alignment:
Q  59 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattca 158  Q
    ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||    
T  3022 ttttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattca 2924  T
Q  159 caacaa 164  Q
    ||||||    
T  2923 caacaa 2918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 16533 - 16632
Alignment:
Q  33 tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttatta 132  Q
    |||||||||||| |||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| |||    
T  16533 tcttccttttatttcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-tta 16627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 16962 - 16882
Alignment:
Q  85 ttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 166  Q
    |||||||||||||||| |||||||||  | || ||||||||||| |||||||| | |||||| |||| ||||||||||||||    
T  16962 ttgatttgattacttggtattaattttttccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaatt 16882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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