View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9462_low_1 (Length: 594)

Name: NF9462_low_1
Description: NF9462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9462_low_1
NF9462_low_1
[»] chr4 (2 HSPs)
chr4 (208-577)||(11120195-11120564)
chr4 (1-125)||(11120647-11120770)
[»] chr5 (15 HSPs)
chr5 (311-577)||(42125421-42125687)
chr5 (311-577)||(42130646-42130912)
chr5 (305-577)||(41711696-41711968)
chr5 (311-551)||(34238773-34239013)
chr5 (311-557)||(42118840-42119089)
chr5 (311-552)||(34230718-34230971)
chr5 (311-552)||(41569932-41570173)
chr5 (28-108)||(42125886-42125967)
chr5 (210-256)||(34230632-34230678)
chr5 (210-256)||(34238687-34238733)
chr5 (211-256)||(42119138-42119183)
chr5 (311-474)||(41446145-41446308)
chr5 (208-255)||(42130953-42131000)
chr5 (408-474)||(41433421-41433487)
chr5 (210-244)||(42125742-42125776)
[»] chr6 (3 HSPs)
chr6 (311-551)||(25520938-25521178)
chr6 (28-82)||(25520653-25520707)
chr6 (216-256)||(25520846-25520886)
[»] chr3 (3 HSPs)
chr3 (311-577)||(8524876-8525142)
chr3 (208-256)||(8525203-8525251)
chr3 (30-79)||(8525377-8525426)
[»] chr2 (1 HSPs)
chr2 (311-557)||(12250262-12250508)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 208 - 577
Target Start/End: Complemental strand, 11120564 - 11120195
Alignment:
Q  208 gccatcacgatgagagctctgctttgcttcagttcaagtcctccttcacgttgttatcttctacctcttttggttattgcactggtaatgaaccttcaac 307  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  11120564 gccatcacgatgagagctttgctttgcttcagttcgagtcctccttcacgttattatcttctacctcttttgattattgcaccggtaatgaaccttcaac 11120465  T
Q  308 aataacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaaggt 407  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11120464 aacaacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaaggt 11120365  T
Q  408 cttcaaggtatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaataatttctccggctctcattttcatt 507  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11120364 cttcaaggcatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaataatttctccggctctcgttttcatt 11120265  T
Q  508 ctaagtttggtgggtttcggagtcttacacatctttacttgtcttatagtaacttttatggtgaaattcc 577  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11120264 ctaagtttggtgggtttcagagtcttacacatctttacttgtcttatagtaacatttatggtgaaattcc 11120195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 11120770 - 11120647
Alignment:
Q  1 aattaaagtttgcctttgaaaatttgtgctataaatatatacgttgtgttccttaccatttcatccacacttacttttctatagcttttcttctttcatt 100  Q
    |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11120770 aattaaagtttgcctttgaaaatttgtgctataaatattttc-ttgtgttccttaccatttcatccacacttatttttctatagcttttcttctttcatt 11120672  T
Q  101 taaaccatatagagtttcaacaaaa 125  Q
    ||||||||||| |||||| ||||||    
T  11120671 taaaccatatacagtttctacaaaa 11120647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 311 - 577
Target Start/End: Complemental strand, 42125687 - 42125421
Alignment:
Q  311 aacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaaggtctt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || ||| |||||||||||||||||||||||||||||| |||    
T  42125687 aacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgtgataccatcactcgtcacgtgattggcctcaatcttggctgtgaaggcctt 42125588  T
Q  411 caaggtatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaataatttctccggctctcattttcattcta 510  Q
    ||||||| | ||||||| || |||||||||||| ||||||||||||| |||||||||||||||    ||||| |||||||   |||||||||||||||||    
T  42125587 caaggtaaactacatcctaacagtacccttttcaatcttgttcatcttcaaacactcaacctttctaacaatgatttctcttactctcattttcattcta 42125488  T
Q  511 agtttggtgggtttcggagtcttacacatctttacttgtcttatagtaacttttatggtgaaattcc 577  Q
    ||||||||||||||  ||||||| |||||||| ||||||||  ||||  |||| | |||||||||||    
T  42125487 agtttggtgggtttatgagtcttgcacatcttgacttgtctcgtagtttctttaaaggtgaaattcc 42125421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 311 - 577
Target Start/End: Complemental strand, 42130912 - 42130646
Alignment:
Q  311 aacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaaggtctt 410  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||| |||||||| |||||| |||||||||||||| |||    
T  42130912 aacatggaaaaatgggactgattgctgctcatggaatggcgtcacgtgtgacacagtctctggtcacgtgattgacctcaaccttggctgtgaaggcctt 42130813  T
Q  411 caaggtatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaataatttctccggctctcattttcattcta 510  Q
      ||||| |||  |||| |||||||||||||| ||||||||||||||||||||||||||||||   |||||| ||||||  | |||||||||||||| ||    
T  42130812 acaggtacattcaatcctaatagtaccctttttcatcttgttcatctccaaacactcaacctttcttacaatgatttctttgactctcattttcattata 42130713  T
Q  511 agtttggtgggtttcggagtcttacacatctttacttgtcttatagtaacttttatggtgaaattcc 577  Q
    ||||| |||| |||| |||||||||||||||| |||||||| ||||||||||  | |||||||||||    
T  42130712 agttttgtggatttcagagtcttacacatcttgacttgtctgatagtaacttagaaggtgaaattcc 42130646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 305 - 577
Target Start/End: Original strand, 41711696 - 41711968
Alignment:
Q  305 aacaataacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaa 404  Q
    ||||| |||||||||||||| ||||||||| |||||||||   |||||||| || |||||| ||| |||||||||| |||||||||| |||||||||||     
T  41711696 aacaacaacatggaaaaatgagactgattgttgctcatggcccggtgtcacatgtgacaccgtctatggtcgcgtggttggcctcaaccttggctgtgat 41711795  T
Q  405 ggtcttcaaggtatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaataatttctccggctctcattttc 504  Q
    || |||||||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||   |||||| |||||||   ||| |||||||    
T  41711796 ggccttcaaggtatattccatcctaataatactcttttccatcttgttcatctccaaacactcaacctttcttacaatgatttctcttactcccattttc 41711895  T
Q  505 attctaagtttggtgggtttcggagtcttacacatctttacttgtcttatagtaacttttatggtgaaattcc 577  Q
    |||||||||||||| |||||  ||||||| |||||||| || ||||||||||| ||||| | |||||||||||    
T  41711896 attctaagtttggtcggtttttgagtcttgcacatcttgacatgtcttatagttactttgaaggtgaaattcc 41711968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 311 - 551
Target Start/End: Original strand, 34238773 - 34239013
Alignment:
Q  311 aacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaaggtctt 410  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | ||||||| ||| |||||||| || ||||| ||||||||  ||    
T  34238773 aacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggccttaaccttggttgtgaaggcttt 34238872  T
Q  411 caaggtatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaataatttctccggctctcattttcattcta 510  Q
    ||||||||| | ||||| ||||||||||||||| || ||||||||||||||||||||||||||    |||||  |||||  || ||  ||||| ||||||    
T  34238873 caaggtatactccatcctaatagtacccttttcaatattgttcatctccaaacactcaacctttctaacaatggtttctatggttcctattttgattcta 34238972  T
Q  511 agtttggtgggtttcggagtcttacacatctttacttgtct 551  Q
    |||||||  |||||  |||||||||||||||| ||||||||    
T  34238973 agtttggcaggtttacgagtcttacacatcttgacttgtct 34239013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 311 - 557
Target Start/End: Complemental strand, 42119089 - 42118840
Alignment:
Q  311 aacatggaaaaatgggactgattgctgctcat---ggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaaggt 407  Q
    ||||||||||||||||||||||||||||||||   || |||||||| |||| | ||   ||||||||| ||||||||| ||||| ||||||| | || |     
T  42119089 aacatggaaaaatgggactgattgctgctcatcatggcatggtgtcgcgtgtgtcagagtctctggtcacgtgattggtctcaaccttggcttttaacgc 42118990  T
Q  408 cttcaaggtatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaataatttctccggctctcattttcatt 507  Q
    |||   |||| ||||||||| || | ||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||  |||| ||||||||    
T  42118989 cttactggtaaattacatcctaacaatacccttttccatcttgttcatctccaaacactaaaccttgcatccaataatttctccgcttctcgttttcatt 42118890  T
Q  508 ctaagtttggtgggtttcggagtcttacacatctttacttgtcttatagt 557  Q
    ||||||||||||| |||  |||||||||||||||| |||||||| |||||    
T  42118889 ctaagtttggtggttttttgagtcttacacatcttgacttgtctcatagt 42118840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 311 - 552
Target Start/End: Original strand, 34230718 - 34230971
Alignment:
Q  311 aacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaaggtctt 410  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | ||||||| ||| |||||||| || ||||||||||||||  ||    
T  34230718 aacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggccttaaccttggctgtgaaggcttt 34230817  T
Q  411 caaggtatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaat------------aatttctccggctctc 498  Q
    ||||||||| | ||||| |||||||||||||||||||||| ||| || ||||  |||||||||    |||||             ||||||| ||||| |    
T  34230818 caaggtatactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaacaattatttctctaacgatttctctggctccc 34230917  T
Q  499 attttcattctaagtttggtgggtttcggagtcttacacatctttacttgtctt 552  Q
    ||||||||||||||||||| ||||||  |||||||||||||||  |||||||||    
T  34230918 attttcattctaagtttggcgggtttatgagtcttacacatctcgacttgtctt 34230971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 311 - 552
Target Start/End: Original strand, 41569932 - 41570173
Alignment:
Q  311 aacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaaggtctt 410  Q
    ||||||||||| || |||  |||| || |||||| ||||||||||||||||| |  ||||||||||||||||||| ||| | |||||||||||| | |||    
T  41569932 aacatggaaaattgagacaaattgttgttcatggcatggtgtcacgtgcgacgctgtctctggtcgcgtgattggtctcgaccttggctgtgaatgcctt 41570031  T
Q  411 caaggtatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaataatttctccggctctcattttcattcta 510  Q
    ||||||| | |  |||| || |  || ||||| ||||||| |||||||||| |||||||||||    ||||| |||||| |  |||  |||| ||||||     
T  41570032 caaggtaaaatttatcctaacaacactctttttcatcttgctcatctccaatcactcaacctttctcacaatgatttcttcaactccaatttgcattctc 41570131  T
Q  511 agtttggtgggtttcggagtcttacacatctttacttgtctt 552  Q
    |||||||||| |||  |||||||||||||||| |||||||||    
T  41570132 agtttggtggatttaagagtcttacacatcttgacttgtctt 41570173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 42125967 - 42125886
Alignment:
Q  28 gctataaatatatacgttgtgttccttaccatttcatccacacttacttttctatagcttttc-ttctttcatttaaaccat 108  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||||||| | | ||||| |||||| | |||||||||    
T  42125967 gctataaatatttaggttgtgtttcttaccatttcatccacacttacttttcttttgattttctttctttgagttaaaccat 42125886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 34230632 - 34230678
Alignment:
Q  210 catcacgatgagagctctgctttgcttcagttcaagtcctccttcac 256  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  34230632 catcatgatgagagctttgctttgcttcagttcaagtcctccttcac 34230678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 34238687 - 34238733
Alignment:
Q  210 catcacgatgagagctctgctttgcttcagttcaagtcctccttcac 256  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  34238687 catcatgatgagagctttgctttgcttcagttcaagtcctccttcac 34238733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 42119183 - 42119138
Alignment:
Q  211 atcacgatgagagctctgctttgcttcagttcaagtcctccttcac 256  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||    
T  42119183 atcatgatgagagctctgctctgcttcagttcaagtcctccttcac 42119138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 311 - 474
Target Start/End: Complemental strand, 41446308 - 41446145
Alignment:
Q  311 aacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaaggtctt 410  Q
    ||||||| ||||||| || ||||| |||||||||  ||||||||| || ||||| || ||||||| ||| |||||| |  | ||  ||||  | |  |||    
T  41446308 aacatggcaaaatggtacagattgttgctcatggcttggtgtcacctgtgacacaatttctggtcacgtaattggcttagacctcagctgcaatgacctt 41446209  T
Q  411 caaggtatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttg 474  Q
    ||||||||  | ||||| || ||||| ||||| ||||||  |||||||||||||||||||||||    
T  41446208 caaggtattattcatcccaacagtacactttttcatctttctcatctccaaacactcaaccttg 41446145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 42131000 - 42130953
Alignment:
Q  208 gccatcacgatgagagctctgctttgcttcagttcaagtcctccttca 255  Q
    |||||||  |||| |||||||||||||||||||||||||| |||||||    
T  42131000 gccatcataatgacagctctgctttgcttcagttcaagtcatccttca 42130953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 41433487 - 41433421
Alignment:
Q  408 cttcaaggtatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttg 474  Q
    |||||||||||  | ||||| || ||||| ||||| ||||||  |||||||||||||||||||||||    
T  41433487 cttcaaggtatgattcatcccaacagtacactttttcatctttctcatctccaaacactcaaccttg 41433421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 42125776 - 42125742
Alignment:
Q  210 catcacgatgagagctctgctttgcttcagttcaa 244  Q
    ||||| |||||||||||||||||||||||||||||    
T  42125776 catcatgatgagagctctgctttgcttcagttcaa 42125742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 311 - 551
Target Start/End: Original strand, 25520938 - 25521178
Alignment:
Q  311 aacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaaggtctt 410  Q
    |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||  | ||||||||||||||||||||| |||||||||||||| ||     
T  25520938 aacatggaaatatgggactgattgctgctcatggcatggtgtcacatgcgacaccacttttggtcgcgtgattggcctcaaccttggctgtgaaggcctc 25521037  T
Q  411 caaggtatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaataatttctccggctctcattttcattcta 510  Q
    ||||||||||| ||||| |||||||| ||||||||||||| |||| | |||| ||||||||||   |||||| ||||| | ||||| ||||||||| |||    
T  25521038 caaggtatattccatcctaatagtactcttttccatcttgctcatattcaaaaactcaacctttcttacaatgatttcactggctcccattttcatgcta 25521137  T
Q  511 agtttggtgggtttcggagtcttacacatctttacttgtct 551  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  25521138 agtttggtgggtttcagagtcttacacatctttacttgtct 25521178  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 25520653 - 25520707
Alignment:
Q  28 gctataaatatatacgttgtgttccttaccatttcatccacacttacttttctat 82  Q
    ||||||||||| |||||||||| ||||  ||||||||||||||||||||||||||    
T  25520653 gctataaatatttacgttgtgtcccttggcatttcatccacacttacttttctat 25520707  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 25520846 - 25520886
Alignment:
Q  216 gatgagagctctgctttgcttcagttcaagtcctccttcac 256  Q
    ||||||||||||||| |||||||||| || |||||||||||    
T  25520846 gatgagagctctgctctgcttcagtttaaatcctccttcac 25520886  T

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Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 311 - 577
Target Start/End: Complemental strand, 8525142 - 8524876
Alignment:
Q  311 aacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaaggtctt 410  Q
    |||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||  ||||| ||||||||||||||| ||||||||||||||||||    
T  8525142 aacatggaaaaatgagattgattgctgctcatgggatggtgtcacgtgtgacaccatcagtggtcacgtgattggcctcaaccttggctgtgaaggtctt 8525043  T
Q  411 caaggtatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaataatttctccggctctcattttcattcta 510  Q
    ||||| ||| |  |||| || ||||||||||||||||||| | || | |||| |||||||||||   ||||| ||||||| |||||| |||||||||| |    
T  8525042 caaggcatactcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaaccttgctaacaatgatttctctggctcttattttcattcaa 8524943  T
Q  511 agtttggtgggtttcggagtcttacacatctttacttgtcttatagtaacttttatggtgaaattcc 577  Q
    ||||||||||||||  |||||| ||||||||| |||||||| ||||| || || | |||||||||||    
T  8524942 agtttggtgggtttttgagtctcacacatcttgacttgtctcatagttaccttaaaggtgaaattcc 8524876  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 8525251 - 8525203
Alignment:
Q  208 gccatcacgatgagagctctgctttgcttcagttcaagtcctccttcac 256  Q
    |||||||  |||||||||||||||||||||| |||||||| ||||||||    
T  8525251 gccatcattatgagagctctgctttgcttcatttcaagtcatccttcac 8525203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 8525426 - 8525377
Alignment:
Q  30 tataaatatatacgttgtgttccttaccatttcatccacacttacttttc 79  Q
    |||||||||| |||||||||||||||  || ||||||||||||| |||||    
T  8525426 tataaatatagacgttgtgttccttaaaatatcatccacacttagttttc 8525377  T

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Target: chr2 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 311 - 557
Target Start/End: Complemental strand, 12250508 - 12250262
Alignment:
Q  311 aacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaaggtctt 410  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| || ||||| |||| |||||  |||||||||||| | ||||||  |||||| |||    
T  12250508 aacatggcaaaatgggactgattgctgctcatggcatggtgtcacatgtgacacaatctatggtcatgtgattggcctcgaccttggcgatgaaggcctt 12250409  T
Q  411 caaggtatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaataatttctccggctctcattttcattcta 510  Q
     | ||||||||||| || ||||||||||||||| |||||| ||||||||||||||||||||||   | |||| |||||||   ||| |||||||||||||    
T  12250408 gatggtatattacaacctaatagtacccttttcgatcttgctcatctccaaacactcaacctttcttccaatgatttctcaaactcccattttcattcta 12250309  T
Q  511 agtttggtgggtttcggagtcttacacatctttacttgtcttatagt 557  Q
    |||||||||| ||    | ||||||||||||| |||||||| |||||    
T  12250308 agtttggtggattctttaatcttacacatcttgacttgtctaatagt 12250262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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