View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9462_low_14 (Length: 209)

Name: NF9462_low_14
Description: NF9462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9462_low_14
NF9462_low_14
[»] chr2 (3 HSPs)
chr2 (75-142)||(26179552-26179619)
chr2 (95-142)||(2757820-2757867)
chr2 (139-195)||(2758483-2758539)
[»] chr7 (3 HSPs)
chr7 (75-142)||(38095440-38095507)
chr7 (83-142)||(26788987-26789046)
chr7 (137-185)||(40261512-40261560)
[»] chr8 (2 HSPs)
chr8 (26-140)||(32019774-32019889)
chr8 (83-127)||(40642366-40642410)
[»] chr3 (1 HSPs)
chr3 (43-142)||(47955996-47956095)
[»] chr1 (2 HSPs)
chr1 (137-195)||(38002940-38002998)
chr1 (137-195)||(38003607-38003665)


Alignment Details
Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 26179552 - 26179619
Alignment:
Q  75 gaagcttagttaacagagaactaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  26179552 gaagcttagttaacagagaactaacagtgttacatgataggggtggtgtttgtagatttgaataaaaa 26179619  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 2757867 - 2757820
Alignment:
Q  95 ctaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 142  Q
    ||||| |||||||||||||||||||||| ||||| |||| ||||||||    
T  2757867 ctaacggtgttacatgataggggaggtgcttgtaaatttaaataaaaa 2757820  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 2758483 - 2758539
Alignment:
Q  139 aaaactagagggaatgtcagtgctatttaagaataccttaagggaggcgagtataat 195  Q
    |||| ||||||| |||| |||| |||||||||| ||||||||||||| |||| ||||    
T  2758483 aaaattagaggggatgttagtgttatttaagaagaccttaagggaggtgagtgtaat 2758539  T

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Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 38095440 - 38095507
Alignment:
Q  75 gaagcttagttaacagagaactaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 142  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || ||||||||||    
T  38095440 gaagcttagttaacagagaactaacggtgttacatgataggggtggtgtttgtagatatgaataaaaa 38095507  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 26788987 - 26789046
Alignment:
Q  83 gttaacagagaactaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 142  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  26788987 gttaacacagaactaacagtgttacatgataggggtggtgtttgtagatttgaataaaaa 26789046  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 40261512 - 40261560
Alignment:
Q  137 taaaaactagagggaatgtcagtgctatttaagaataccttaagggagg 185  Q
    |||||||||||||| |||| ||||  || ||||||||||||||||||||    
T  40261512 taaaaactagaggggatgttagtgtcatataagaataccttaagggagg 40261560  T

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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 32019774 - 32019889
Alignment:
Q  26 ttgtatgaaaagcaaag-tgaatggtagggggagccgtttttccggcagagaag-cttagttaacagagaactaacagtgttacatgataggggaggtgt 123  Q
    ||||||||||||||||| ||||| |||||||| |  |||||| || |||||| | ||||||||||||||||||||| |||||| || |||||||||| ||    
T  32019774 ttgtatgaaaagcaaagatgaattgtaggggg-gtagttttttcgacagagagggcttagttaacagagaactaacggtgttatataataggggaggcgt 32019872  T
Q  124 ttgtatatttgaataaa 140  Q
    ||||| |||||||||||    
T  32019873 ttgtagatttgaataaa 32019889  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 40642366 - 40642410
Alignment:
Q  83 gttaacagagaactaacagtgttacatgataggggaggtgtttgt 127  Q
    |||| ||||| || |||||||||||||||||||||||||||||||    
T  40642366 gttaccagagcaccaacagtgttacatgataggggaggtgtttgt 40642410  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 47955996 - 47956095
Alignment:
Q  43 tgaatggtagggggagccgtttttccggcagagaagcttagttaacagagaactaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 142  Q
    ||||||||||||||||  |||||| || ||  |||||| |||||||||||||| ||| ||||||||||| ||||| |||||||||| |||||| ||||||    
T  47955996 tgaatggtagggggagtagttttttcgacaaggaagctaagttaacagagaaccaacggtgttacatgacaggggtggtgtttgtagatttgattaaaaa 47956095  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 38002998 - 38002940
Alignment:
Q  137 taaaaactagagggaatgtcagtgctatttaagaataccttaagggaggcgagtataat 195  Q
    |||||||||||||| |||| ||||||||||||||| |||| |||||||| |||| ||||    
T  38002998 taaaaactagaggggatgttagtgctatttaagaaaacctaaagggaggtgagtgtaat 38002940  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 38003607 - 38003665
Alignment:
Q  137 taaaaactagagggaatgtcagtgctatttaagaataccttaagggaggcgagtataat 195  Q
    |||||| |||||||  ||| ||||||||||||||| ||||||||||||| |||| ||||    
T  38003607 taaaaagtagaggggttgttagtgctatttaagaagaccttaagggaggtgagtgtaat 38003665  T

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