View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9462_low_2 (Length: 416)
Name: NF9462_low_2
Description: NF9462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9462_low_2 |
 | |
|
| [»] scaffold0264 (2 HSPs) |
| | |
|
| [»] scaffold0007 (2 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 18997368 - 18996970
Alignment:
| Q |
1 |
tgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttactcctacaactatttcttttccaccgttgatacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18997368 |
tgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttactcctacaactatttcttttccactgttgatacaag |
18997269 |
T |
|
| Q |
101 |
tcctatgtatagagatataaatatcacctatacagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgcatatgaaacggggtac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18997268 |
tcctatgtatagagatataaatatcacctatacagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgcatatgaaacggggtac |
18997169 |
T |
|
| Q |
201 |
agtgttgaaagatatatgactaattcattaaaactgtatgatgaacaaaacttgtatagtcttggacaatgtacgcgagatttgtctagtgaggattgcg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18997168 |
agtgttgaaagatatatgactaattcattaaaactgtatgatgaacaaaacttgtatagtcttggacaatgtacgcgagatttgtctagtgaggattgca |
18997069 |
T |
|
| Q |
301 |
ctacttgtctaaaggatgtaatcaatagagcaattccatggtcaaaattgagtaatgttaggggaagaattatatatcctagctgcaatctgaggtttg |
399 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18997068 |
cttcttgtctaaaggatgtgatcaatagagcaattccatggtcaaaattgagtaatgttaggggaagaattatatatcctagctgcaatctgaggtttg |
18996970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 91 - 399
Target Start/End: Original strand, 22205407 - 22205721
Alignment:
| Q |
91 |
ttgatacaagtcctatgtatagagatataaatatcacctat------acagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgc |
184 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||| ||||||||| || || || || |||| ||||||||| || ||||||| |
|
|
| T |
22205407 |
ttgaaacaagtcctatgtatagagatataaatatcactgattacaccacaaaccaaaactggttcactagtaccttatcgaatcagttatctcaacttgc |
22205506 |
T |
|
| Q |
185 |
atatgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgaacaaaacttgtatagtcttggacaatgtacgcgagatttg |
284 |
Q |
| |
|
|||| || ||| |||||| ||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22205507 |
gaatgatacaggggacagtgatgaaagatataagactaattcattaaaactgaatgatgtacaaaccttgtatagtcttggacaatgtacgcgagatttg |
22205606 |
T |
|
| Q |
285 |
tctagtgaggattgcgctacttgtctaaaggatgtaatcaatagagcaattccatggtcaaaattgagtaatgttaggggaagaattatatatcctagct |
384 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| |||| || | |||||||||||||||| || ||| |||| ||||||||||||| |||||||||| |
|
|
| T |
22205607 |
tctagtgagggttgcgctacttgtctaaataatgtgatcactacatcaattccatggtcaaatttcggtagtgttgggggaagaattatctatcctagct |
22205706 |
T |
|
| Q |
385 |
gcaatctgaggtttg |
399 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
22205707 |
gcaatctgaggtttg |
22205721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 96 - 399
Target Start/End: Complemental strand, 20085751 - 20085439
Alignment:
| Q |
96 |
acaagtcctatgtatagagatataaatatcacctat---------acagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgcat |
186 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | ||| |||||||||||| || || ||||||| |||||||| || ||||||| |
|
|
| T |
20085751 |
acaagtcctatgtatagcgatataaatatcaccaaagattccatcacaaaccaaaacttgttcactagtacattatcaaatcagttatctcaacttgcga |
20085652 |
T |
|
| Q |
187 |
atgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgaacaaaacttgtatagtcttggacaatgtacgcgagatttgtc |
286 |
Q |
| |
|
|||| || ||| |||||| ||||||||||| |||||||||||||||||| |||||| ||||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
20085651 |
atgatacaggggacagtggtgaaagatataagactaattcattaaaactaaatgatgtacaaaccttgtatactcttggacaatgtacgcaagatttgtc |
20085552 |
T |
|
| Q |
287 |
tagtgaggattgcgctacttgtctaaaggatgtaatcaatagagcaattccatggtcaaaattgagtaatgttaggggaagaattatatatcctagctgc |
386 |
Q |
| |
|
|||| |||||||| || |||||||||| ||||| ||||||| ||| |||||||||||||| ||| ||| |||| |||||||||||||||||||||||||| |
|
|
| T |
20085551 |
tagtcaggattgcacttcttgtctaaatgatgtgatcaatacagcgattccatggtcaaatttgggtagtgttgggggaagaattatatatcctagctgc |
20085452 |
T |
|
| Q |
387 |
aatctgaggtttg |
399 |
Q |
| |
|
||||||||||||| |
|
|
| T |
20085451 |
aatctgaggtttg |
20085439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 96 - 399
Target Start/End: Complemental strand, 20237664 - 20237352
Alignment:
| Q |
96 |
acaagtcctatgtatagagatataaatatcacctat---------acagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgcat |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||| ||||||||| || || || ||||||| |||||||| | ||||||| |
|
|
| T |
20237664 |
acaagtcctatgtatagagatataaatatcaccgaagattccatcacataccaaaactcgttcactagtacattatcaaatcagttatatcaacttgcga |
20237565 |
T |
|
| Q |
187 |
atgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgaacaaaacttgtatagtcttggacaatgtacgcgagatttgtc |
286 |
Q |
| |
|
|||| || ||| |||||| ||||| ||| |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20237564 |
atgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgataaacaaaccttgtatagtcttggacaatgtacgagagatttgtc |
20237465 |
T |
|
| Q |
287 |
tagtgaggattgcgctacttgtctaaaggatgtaatcaatagagcaattccatggtcaaaattgagtaatgttaggggaagaattatatatcctagctgc |
386 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| ||| || ||||||||||||| |||| ||| | | |||| ||||||||||||| ||||||||||| |
|
|
| T |
20237464 |
tagtgaggattgcgcttcttgtctaaatactgtgatcgttacagcaattccatggccaaatttgggcagtgttgggggaagaattatgtatcctagctgt |
20237365 |
T |
|
| Q |
387 |
aatctgaggtttg |
399 |
Q |
| |
|
||||||||||||| |
|
|
| T |
20237364 |
aatctgaggtttg |
20237352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 96 - 399
Target Start/End: Complemental strand, 22131648 - 22131336
Alignment:
| Q |
96 |
acaagtcctatgtatagagatataaatatcacctat---------acagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgcat |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||| ||||||||| || || || ||||||| |||||||| | ||||||| |
|
|
| T |
22131648 |
acaagtcctatgtatagagatataaatatcaccgaagattccatcacataccaaaactcgttcactagtacattatcaaatcagttatatcaacttgcga |
22131549 |
T |
|
| Q |
187 |
atgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgaacaaaacttgtatagtcttggacaatgtacgcgagatttgtc |
286 |
Q |
| |
|
|||| || ||| |||||| ||||| ||| |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22131548 |
atgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgataaacaaaccttgtatagtcttggacaatgtacgagagatttgtc |
22131449 |
T |
|
| Q |
287 |
tagtgaggattgcgctacttgtctaaaggatgtaatcaatagagcaattccatggtcaaaattgagtaatgttaggggaagaattatatatcctagctgc |
386 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| ||| || ||||||||||||| |||| ||| | | |||| ||||||||||||| ||||||||||| |
|
|
| T |
22131448 |
tagtgaggattgcgcttcttgtctaaatactgtgatcgttacagcaattccatggccaaatttgggcagtgttgggggaagaattatgtatcctagctgt |
22131349 |
T |
|
| Q |
387 |
aatctgaggtttg |
399 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22131348 |
aatctgaggtttg |
22131336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 206 - 399
Target Start/End: Original strand, 24385744 - 24385943
Alignment:
| Q |
206 |
tgaaagatatatgactaattcattaaaactgtatgatgaacaa------aacttgtatagtcttggacaatgtacgcgagatttgtctagtgaggattgc |
299 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| |||| | |||||||| ||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
24385744 |
tgaaagatataagactaattcattaaaactaaatgatgtacaagtacaaaccttgtatactcttggacaatgtacgcaagatttgtctagtcaggattgc |
24385843 |
T |
|
| Q |
300 |
gctacttgtctaaaggatgtaatcaatagagcaattccatggtcaaaattgagtaatgttaggggaagaattatatatcctagctgcaatctgaggtttg |
399 |
Q |
| |
|
||| |||||||||| ||||| ||| || |||||||||||||| ||| ||| ||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24385844 |
gcttcttgtctaaatgatgtgatcgttacagcaattccatggtaaaatttgggtagtgttgggggaagaattatatatcctagctgcaatctgaggtttg |
24385943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 399
Target Start/End: Complemental strand, 18981222 - 18981127
Alignment:
| Q |
304 |
cttgtctaaaggatgtaatcaatagagcaattccatggtcaaaattgagtaatgttaggggaagaattatatatcctagctgcaatctgaggtttg |
399 |
Q |
| |
|
|||||||||| ||||| || | || |||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18981222 |
cttgtctaaatgatgtgattactacagcaattccatggtcaaatttgggtagtgttgggggaagaattatatatcctagctgcaatctgaggtttg |
18981127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 238 - 399
Target Start/End: Complemental strand, 21971481 - 21971320
Alignment:
| Q |
238 |
atgatgaacaaaacttgtatagtcttggacaatgtacgcgagatttgtctagtgaggattgcgctacttgtctaaaggatgtaatcaatagagcaattcc |
337 |
Q |
| |
|
||||| |||||| ||||||| ||||| ||||||||| ||||||||||||| |||||||| | | |||||||| ||| | |||| ||||| |||||| |
|
|
| T |
21971481 |
atgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattgcaattcatgtctaaatgatatgatcagtagagaaattcc |
21971382 |
T |
|
| Q |
338 |
atggtcaaaattgagtaatgttaggggaagaattatatatcctagctgcaatctgaggtttg |
399 |
Q |
| |
|
||||||| ||| | | |||| | |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21971381 |
atggtcatttttgggaagtgttggaggaagaatcatatatcctagctgcaatctgaggtttg |
21971320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 20238485 - 20238397
Alignment:
| Q |
1 |
tgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttactcctacaactatttcttttccacc |
89 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| || |||||||||||||| ||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
20238485 |
tgtccttagactgccctttatcaaaacaagccgtgatttattacgacgattgtcttgttcgttactcagataactatttcttttccacc |
20238397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 22132469 - 22132381
Alignment:
| Q |
1 |
tgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttactcctacaactatttcttttccacc |
89 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| || |||||||||||||| ||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
22132469 |
tgtccttagactgccctttatcaaaacaagccgtgatttattacgacgattgtcttgttcgttactcagataactatttcttttccacc |
22132381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 399
Target Start/End: Complemental strand, 20204966 - 20204759
Alignment:
| Q |
192 |
acggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgaacaaaacttgtatagtcttggacaatgtacgcgagatttgtctagtg |
291 |
Q |
| |
|
|||||| ||| || ||||| || || ||| |||||||| | | || ||||| |||||| |||||||| | ||| ||||||||| ||||||||| | || |
|
|
| T |
20204966 |
acggggaacaatgatgaaaaatttacgacaaattcattgatattgaatgataaacaaaccttgtatactgttgaacaatgtacaaaagatttgtcaactg |
20204867 |
T |
|
| Q |
292 |
aggattgcgctacttgtctaaaggatgtaatcaatagagcaattccatggtcaaaattgagtaatgttaggggaagaattatatatcctagctgcaatct |
391 |
Q |
| |
|
| || ||| | | |||||||| ||| | |||| || || ||||||||||||| ||| | | |||| | |||||||| ||||||||||||||||||| |
|
|
| T |
20204866 |
acgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccatggtcatttttgggaagtgttggaggaagaatcttatatcctagctgcaatct |
20204767 |
T |
|
| Q |
392 |
gaggtttg |
399 |
Q |
| |
|
|||||||| |
|
|
| T |
20204766 |
gaggtttg |
20204759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 399
Target Start/End: Complemental strand, 22098989 - 22098782
Alignment:
| Q |
192 |
acggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgaacaaaacttgtatagtcttggacaatgtacgcgagatttgtctagtg |
291 |
Q |
| |
|
|||||| ||| || ||||| || || ||| |||||||| | | || ||||| |||||| |||||||| | ||| ||||||||| ||||||||| | || |
|
|
| T |
22098989 |
acggggaacaatgatgaaaaatttacgacaaattcattgatattgaatgataaacaaaccttgtatactgttgaacaatgtacaaaagatttgtcaactg |
22098890 |
T |
|
| Q |
292 |
aggattgcgctacttgtctaaaggatgtaatcaatagagcaattccatggtcaaaattgagtaatgttaggggaagaattatatatcctagctgcaatct |
391 |
Q |
| |
|
| || ||| | | |||||||| ||| | |||| || || ||||||||||||| ||| | | |||| | |||||||| ||||||||||||||||||| |
|
|
| T |
22098889 |
acgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccatggtcatttttgggaagtgttggaggaagaatcttatatcctagctgcaatct |
22098790 |
T |
|
| Q |
392 |
gaggtttg |
399 |
Q |
| |
|
|||||||| |
|
|
| T |
22098789 |
gaggtttg |
22098782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 20086570 - 20086527
Alignment:
| Q |
3 |
tccttagattgccctttatccaaacaagcagtcatttattacga |
46 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||||||||| |
|
|
| T |
20086570 |
tccttagattgcccattatccaaacaagctgtaatttattacga |
20086527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 24385624 - 24385656
Alignment:
| Q |
96 |
acaagtcctatgtatagagatataaatatcacc |
128 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
24385624 |
acaagtcctatgtatagcgatataaatatcacc |
24385656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 91 - 399
Target Start/End: Complemental strand, 15706 - 15392
Alignment:
| Q |
91 |
ttgatacaagtcctatgtatagagatataaatatcacctat------acagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgc |
184 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||| ||||||||| || || || || |||| ||||||||| || ||||||| |
|
|
| T |
15706 |
ttgaaacaagtcctatgtatagagatataaatatcactgattacaccacaaaccaaaactggttcactagtaccttatcgaatcagttatctcaacttgc |
15607 |
T |
|
| Q |
185 |
atatgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgaacaaaacttgtatagtcttggacaatgtacgcgagatttg |
284 |
Q |
| |
|
|||| || ||| |||||| ||||||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15606 |
gaatgatacaggggacagtgatgaaagatataagactaattcattaaaactgaatgataaacaaaccttgtatagtcttggacaatgtacgcgagatttg |
15507 |
T |
|
| Q |
285 |
tctagtgaggattgcgctacttgtctaaaggatgtaatcaatagagcaattccatggtcaaaattgagtaatgttaggggaagaattatatatcctagct |
384 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| |||| || | |||||||||||||||| ||| ||| |||| ||||||||||||| |||||||||| |
|
|
| T |
15506 |
tctagtgagggttgcgctacttgtctaaataatgtgatcactacatcaattccatggtcaaatttgggtagtgttgggggaagaattatctatcctagct |
15407 |
T |
|
| Q |
385 |
gcaatctgaggtttg |
399 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
15406 |
gcaatctgaggtttg |
15392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 16519 - 16476
Alignment:
| Q |
3 |
tccttagattgccctttatccaaacaagcagtcatttattacga |
46 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||||||||| |
|
|
| T |
16519 |
tccttagattgcccattatccaaacaagctgtaatttattacga |
16476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 96 - 399
Target Start/End: Original strand, 5765 - 6077
Alignment:
| Q |
96 |
acaagtcctatgtatagagatataaatatcacctata---------cagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgcat |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | || |||||||||||| || || ||||||| ||| |||| || ||||||| |
|
|
| T |
5765 |
acaagtcctatgtatagagatataaatatcaccaaaaattgtagcacaaaccaaaacttgttcactagtacattatccaatgagttatctcaacttgcga |
5864 |
T |
|
| Q |
187 |
atgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgaacaaaacttgtatagtcttggacaatgtacgcgagatttgtc |
286 |
Q |
| |
|
|||| || ||| |||||| ||| ||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5865 |
atgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgatgtacaaaccttgtatagtcttggacaatgtacgcgagatttgtc |
5964 |
T |
|
| Q |
287 |
tagtgaggattgcgctacttgtctaaaggatgtaatcaatagagcaattccatggtcaaaattgagtaatgttaggggaagaattatatatcctagctgc |
386 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||| || ||||||||| |||||||| ||| ||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
5965 |
tagtgaggattgcgctacttgtctaaatgatgtgatcgctacagcaattccctggtcaaatttgggtagtgttgggggcagaattatatatcctagctgc |
6064 |
T |
|
| Q |
387 |
aatctgaggtttg |
399 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6065 |
aatctgaggtttg |
6077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 4923 - 5026
Alignment:
| Q |
1 |
tgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttactcctacaactatttcttttccaccgttgatacaag |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || ||||||||||| | || | ||||| |||||| | | | |||||||||||| |||||||||| |
|
|
| T |
4923 |
tgtccttagattgcccattatccaaacaagctgtaatttattacgaaaattgcatggttcgatactccaatgagtctttcttttccactgttgatacaaa |
5022 |
T |
|
| Q |
101 |
tcct |
104 |
Q |
| |
|
|||| |
|
|
| T |
5023 |
tcct |
5026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 96 - 399
Target Start/End: Original strand, 48238 - 48550
Alignment:
| Q |
96 |
acaagtcctatgtatagagatataaatatcacc---tat------acagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgcat |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||| | | |||||||| || || ||||||| ||||||||| || |||||||| |
|
|
| T |
48238 |
acaagtcctatgtatagagatataaatatcaccaaatattttagcacatatctaaacttgttcactagtacattatcgaatcagttatctcaacttgcaa |
48337 |
T |
|
| Q |
187 |
atgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgaacaaaacttgtatagtcttggacaatgtacgcgagatttgtc |
286 |
Q |
| |
|
|||| || ||| |||||| ||| ||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||| |||||||||| |
|
|
| T |
48338 |
atgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgataaacaaaccttgtatagtcttgcacaatgtacgagagatttgtc |
48437 |
T |
|
| Q |
287 |
tagtgaggattgcgctacttgtctaaaggatgtaatcaatagagcaattccatggtcaaaattgagtaatgttaggggaagaattatatatcctagctgc |
386 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||| ||| || |||||||||||||||||| ||| ||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
48438 |
tagtcaggattgctctacttgtctaaatgatgtgatcgttacagcaattccatggtcaaatttgggtagtgttgggggaagaattatctatcctagctgc |
48537 |
T |
|
| Q |
387 |
aatctgaggtttg |
399 |
Q |
| |
|
||||||||||||| |
|
|
| T |
48538 |
aatctgaggtttg |
48550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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