View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9462_low_4 (Length: 402)
Name: NF9462_low_4
Description: NF9462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9462_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 38574698 - 38575082
Alignment:
| Q |
1 |
agagccaattctaccttctagacatgggaagttgttggaagaacaatggtgcaccttgtgatggagatgtactaactgatgtcactagatacagtgaaat |
100 |
Q |
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| T |
38574698 |
agagccaattctaccttctagacatgggaagttgttggaagaacaatggtgcaccttgtgatggagatgtactaactgatgtcactagatacagtgaaat |
38574797 |
T |
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| Q |
101 |
gatcatcaatccagaaactccagcttggtgtagccctacaggtttaggaaattgtccaccatttcatatcacaccagataacaaaaagatattcagaaat |
200 |
Q |
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| T |
38574798 |
gatcatcaatccagaaactccagcttggtgtagccctacaggtttaggaaattgtccaccatttcatatcacaccagataacaaaaagatattcagaaat |
38574897 |
T |
|
| Q |
201 |
gacactaccaatttcccttattcagcttatcactattactgtgctccaggcaatgctcaacatttagagcaacctgttagtacttgtgatccttatagta |
300 |
Q |
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| T |
38574898 |
gacactgccaatttcccttattcagcttatcactattactgtgctccaggcaatgctcaacatttagagcaacctgttagtacttgtgatccttatagta |
38574997 |
T |
|
| Q |
301 |
atcctcaagcacaagagatagttcagttattgcctcatcctatttggggtgagtatggttatcccattaataaaggtgatggttg |
385 |
Q |
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| T |
38574998 |
atcctcaagcacaagagatagttcagttattgcctcatcctatttggggtgagtatggttatcccattaataaaggtgatggttg |
38575082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 30818043 - 30817996
Alignment:
| Q |
2 |
gagccaattctaccttctagacatgggaagttgttggaagaacaatgg |
49 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
30818043 |
gagccaattctacctcatggacatgggaagttgttggaagaacaatgg |
30817996 |
T |
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