View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9462_low_5 (Length: 331)
Name: NF9462_low_5
Description: NF9462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9462_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 35446267 - 35445962
Alignment:
| Q |
18 |
cttccaagactcgattcattcatgaatgatttgcttttgggatctaagagctgtgcaactgtttcaaatttttggtcgaaagaagatagaggggcaagga |
117 |
Q |
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| T |
35446267 |
cttccaagactcgattcattcatgaatgatttgcttttgggatctaagagctgtgcaactgtttcaaatttttggtcgaaagaagatagaggggcaagga |
35446168 |
T |
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| Q |
118 |
ggattcttggcactatgtcatatctcatcacaaaatggaagaagtggtcagtccaattttctctccttgtagcatgagaaaatatgtgatttccaactaa |
217 |
Q |
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| T |
35446167 |
ggattcttggcactatgtcatatctcatcacaaaatggaagaagtggtcagtccaattttctctccttgtagcatgagaaaatatgtgatttccaactaa |
35446068 |
T |
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| Q |
218 |
aggagaaccaaaagtaatacagatgggagggatacgatcggggaattttgtagttgggaagtttactaaggcccaaagtgctgccagaatagccactgga |
317 |
Q |
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| T |
35446067 |
aggagaaccaaaagtaatacagatgggagggatacgatcggggaattttgtagttgggaagtttactaaggcccaaagtgctgccagaatagccactgga |
35445968 |
T |
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| Q |
318 |
ccacca |
323 |
Q |
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| T |
35445967 |
ccacca |
35445962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 35681987 - 35682096
Alignment:
| Q |
123 |
cttggcactatgtcatatctcatcacaaaatggaagaagtggtcagtccaattttctctccttgtagcatgagaaaatatgtgatttccaactaaaggag |
222 |
Q |
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| T |
35681987 |
cttggcacaatgtcatattgcatgacaaagtgtatgaaatgatgagaccatttttctctgtttgaagcatgagagaatatatgattaccaaccaagggag |
35682086 |
T |
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| Q |
223 |
aaccaaaagt |
232 |
Q |
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| T |
35682087 |
aaccaaaagt |
35682096 |
T |
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