View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9462_low_6 (Length: 319)

Name: NF9462_low_6
Description: NF9462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9462_low_6
NF9462_low_6
[»] chr3 (21 HSPs)
chr3 (1-164)||(31252887-31253050)
chr3 (1-164)||(13002536-13002699)
chr3 (161-301)||(31252696-31252836)
chr3 (161-299)||(13002750-13002888)
chr3 (1-154)||(31093336-31093489)
chr3 (12-164)||(27206907-27207059)
chr3 (176-301)||(31093565-31093690)
chr3 (186-265)||(25658831-25658910)
chr3 (186-265)||(25665236-25665315)
chr3 (186-265)||(25671641-25671720)
chr3 (186-265)||(25678046-25678125)
chr3 (186-265)||(25684722-25684801)
chr3 (4-164)||(16163579-16163737)
chr3 (186-301)||(16163386-16163503)
chr3 (186-300)||(27206720-27206831)
chr3 (196-265)||(27229419-27229488)
chr3 (54-112)||(25659041-25659099)
chr3 (54-112)||(25665446-25665504)
chr3 (54-112)||(25671851-25671909)
chr3 (54-112)||(25678256-25678314)
chr3 (54-112)||(25684932-25684990)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 31253050 - 31252887
Alignment:
Q  1 tgtaatcatgattggaattcatcaaagaaagtctttcttaatatttacatcatcaattctaagctatcttgaaaggagcaggttttagagaaggatatgc 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31253050 tgtaatcatgattggaattcatgaaagaaagtctttcttaatatttacatcatcaattctaagctatcttgaaaggagcaggttttagagaaggatatgc 31252951  T
Q  101 aaaagggccttcgattaatcctttagctatttgcttataagcggcttcggtaaaatggggtcca 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31252950 aaaagggccttcgattaatcctttagctatttgcttataagcggcttcggtaaaatggggtcca 31252887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 13002536 - 13002699
Alignment:
Q  1 tgtaatcatgattggaattcatcaaagaaagtctttcttaatatttacatcatcaattctaagctatcttgaaaggagcaggttttagagaaggatatgc 100  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13002536 tgtaatcatgattgtaattcattaaagaaagtctttcttaatatttacatcatcaattctaagctatcttgaaaggagcaggttttagagaaggatatgc 13002635  T
Q  101 aaaagggccttcgattaatcctttagctatttgcttataagcggcttcggtaaaatggggtcca 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13002636 aaaagggccttcgattaatcctttagctatttgcttataagcggcttcggtaaaatggggtcca 13002699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 161 - 301
Target Start/End: Complemental strand, 31252836 - 31252696
Alignment:
Q  161 tccacaccaatactcatcatgatgatatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||    
T  31252836 tccacaccaatactcatcatgatgatatggtccacttcctccacaacatgctttcaaaatctcgaccttatcagaaataaaacctgcatcattaatgtac 31252737  T
Q  261 ataaattagtgaatgggatcaaacaaatttgataagaataa 301  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31252736 ataaattagtgaatgggatcaaacaaatttgataagaataa 31252696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 161 - 299
Target Start/End: Original strand, 13002750 - 13002888
Alignment:
Q  161 tccacaccaatactcatcatgatgatatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||    
T  13002750 tccacaccaatactcatcatgatgatatggtccacttcctccacaacatgctttcaaaatctcgaccttatcagaaataaaacctgcatcattaatgtac 13002849  T
Q  261 ataaattagtgaatgggatcaaacaaatttgataagaat 299  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13002850 ataaattagtgaatgggatcaaacaaatttgataagaat 13002888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 31093336 - 31093489
Alignment:
Q  1 tgtaatcatgattggaattcatcaaagaaagtctttcttaatatttacatcatcaattctaagctatcttgaaaggagcaggttttagagaaggatatgc 100  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31093336 tgtaatcatgcttggaattcatcaaagaaagtcgttcttaatgtttacatcatcgattctaagctatcttgaaaggagcaggttttagagaaggatatgc 31093435  T
Q  101 aaaagggccttcgattaatcctttagctatttgcttataagcggcttcggtaaa 154  Q
    ||||| |||||| | ||| | ||||||||| |||||||||||||||||||||||    
T  31093436 aaaagagccttccactaaacatttagctatatgcttataagcggcttcggtaaa 31093489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 27207059 - 27206907
Alignment:
Q  12 ttggaattcatcaaagaaagtctttcttaatatttacatcatcaattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagggcctt 111  Q
    |||||| |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||| ||||||    
T  27207059 ttggaaatcatcaaagaaagtctttcttaatgtttgcatcatcaattctaaactatcttgaaaggagcgggttttagagaaggatttgcaaaatggcctt 27206960  T
Q  112 cgattaatcctttagctatttgcttataagcggcttcggtaaaatggggtcca 164  Q
    ||||||| ||||||| |||||| |||| ||| ||||| ||||| || ||||||    
T  27206959 cgattaaacctttagttatttgtttatgagctgcttcagtaaagtgcggtcca 27206907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 31093565 - 31093690
Alignment:
Q  176 atcatgatgatatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaattagtgaatg 275  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||||||||| ||| ||||||||| |||    
T  31093565 atcatgatgatatggtccacttcctccgcaacatgctttcaaaatttcgactttatcagaaataaaacctgcatcattaatgaacagaaattagtgcatg 31093664  T
Q  276 ggatcaaacaaatttgataagaataa 301  Q
    |||||||| |||||||||||| ||||    
T  31093665 ggatcaaataaatttgataagtataa 31093690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 25658910 - 25658831
Alignment:
Q  186 tatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaa 265  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||| |||||||||||||||||||||| ||||||||    
T  25658910 tatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacataaa 25658831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 25665315 - 25665236
Alignment:
Q  186 tatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaa 265  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||| |||||||||||||||||||||| ||||||||    
T  25665315 tatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacataaa 25665236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 25671720 - 25671641
Alignment:
Q  186 tatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaa 265  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||| |||||||||||||||||||||| ||||||||    
T  25671720 tatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacataaa 25671641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 25678125 - 25678046
Alignment:
Q  186 tatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaa 265  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||| |||||||||||||||||||||| ||||||||    
T  25678125 tatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacataaa 25678046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 25684801 - 25684722
Alignment:
Q  186 tatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaa 265  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||| |||||||||||||||||||||| ||||||||    
T  25684801 tatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacataaa 25684722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 16163737 - 16163579
Alignment:
Q  4 aatcatgattggaattcatcaaagaaagtctttcttaatatttacatcatcaattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaa 103  Q
    ||||||| || ||||||||| || |||||||||||| || |   ||||||||||||||  |||||||||||| |||||||||||| || |||| ||||||    
T  16163737 aatcatgcttagaattcatcgaacaaagtctttcttgatgtg--catcatcaattctagactatcttgaaagcagcaggttttagggatggatttgcaaa 16163640  T
Q  104 agggccttcgattaatcctttagctatttgcttataagcggcttcggtaaaatggggtcca 164  Q
    ||  ||||| ||||| ||||| |||||||||||||| || |||||||| || || ||||||    
T  16163639 agaaccttcaattaaacctttggctatttgcttatatgctgcttcggttaagtgaggtcca 16163579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 301
Target Start/End: Complemental strand, 16163503 - 16163386
Alignment:
Q  186 tatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaattagtga--atgggatcaaa 283  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||| || |||| ||| ||||||||||| ||||||| ||||||  |||||||||||    
T  16163503 tatggtccaattcctccacaacatgctttcaaaacctcgaccttatcagaagtaaagcctacatcattaatgcacataaactagtgaggatgggatcaaa 16163404  T
Q  284 caaatttgataagaataa 301  Q
     |||||||  ||||||||    
T  16163403 taaatttgtcaagaataa 16163386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 27206831 - 27206720
Alignment:
Q  186 tatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaattagtgaatgggatcaaaca 285  Q
    |||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||| ||| || ||   || |||||| |||| | |||| |    
T  27206831 tatggtccacttcctccacaacatgctttcaaaatctcgacgttatccaaagtaaaacctgcattattgatata---aagttagtgcatggaaacaaata 27206735  T
Q  286 aatttgataagaata 300  Q
    ||||||| |||||||    
T  27206734 aatttgacaagaata 27206720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 27229488 - 27229419
Alignment:
Q  196 ttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaa 265  Q
    |||||||||||||||||| || |||||  || |||||| || |||| ||||||| |||||||||||||||    
T  27229488 ttcctccacaacatgcttgcataatcttgaccttatcagaagtaaagcctgcatgattaatgtacataaa 27229419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 25659099 - 25659041
Alignment:
Q  54 caattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagggccttc 112  Q
    |||||||||||||| |||||| ||| || ||| || ||||||| |||||||||||||||    
T  25659099 caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttc 25659041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 25665504 - 25665446
Alignment:
Q  54 caattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagggccttc 112  Q
    |||||||||||||| |||||| ||| || ||| || ||||||| |||||||||||||||    
T  25665504 caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttc 25665446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 25671909 - 25671851
Alignment:
Q  54 caattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagggccttc 112  Q
    |||||||||||||| |||||| ||| || ||| || ||||||| |||||||||||||||    
T  25671909 caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttc 25671851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 25678314 - 25678256
Alignment:
Q  54 caattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagggccttc 112  Q
    |||||||||||||| |||||| ||| || ||| || ||||||| |||||||||||||||    
T  25678314 caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttc 25678256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 25684990 - 25684932
Alignment:
Q  54 caattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagggccttc 112  Q
    |||||||||||||| |||||| ||| || ||| || ||||||| |||||||||||||||    
T  25684990 caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttc 25684932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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