View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9462_low_7 (Length: 265)
Name: NF9462_low_7
Description: NF9462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9462_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 5189140 - 5189377
Alignment:
| Q |
14 |
agatatggaaacacaaactttgttacatttgatcccaaaagaaaaaacttacgtaggttttatcgatcgatgatatatactatactagttcttctatgtt |
113 |
Q |
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| T |
5189140 |
agatatggaaacacaaactttgttacatttgatcccaaaggaaaaaacttacgtaggttttatcgatcgatgatatatactatactagttcttctatgtt |
5189239 |
T |
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| Q |
114 |
atttggagatagataaaaaatattagtagatagataataaaataacttagttgaatcatcattctttttctttcatttatcatattttattttcttacag |
213 |
Q |
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| T |
5189240 |
atttggagatagataaaaaatattagtagatagataataaaataacttagttgaatcatcattctttttctttcatttatcatattttattttcttacag |
5189339 |
T |
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| Q |
214 |
aaatgctattgttagcaaataatgggccagcgaaacct |
251 |
Q |
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| T |
5189340 |
aaatgctattgttagcaaataatgggccagcgaaacct |
5189377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 13916063 - 13916031
Alignment:
| Q |
169 |
tcatcattctttttctttcatttatcatatttt |
201 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
13916063 |
tcatcattctctttctttcatttatcatatttt |
13916031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 9900866 - 9900900
Alignment:
| Q |
167 |
aatcatcattctttttctttcatttatcatatttt |
201 |
Q |
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| T |
9900866 |
aatcaccattctttttctttcatttatcatatttt |
9900900 |
T |
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