View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9462_low_9 (Length: 248)
Name: NF9462_low_9
Description: NF9462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9462_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 47895962 - 47896188
Alignment:
| Q |
1 |
aaaagtgaaagagcccgcatcatctcccaatatagaaggaccgctgattactcttcaagaacgacaaatagatgatggaatggctcttcacgcttctgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47895962 |
aaaagtgaaagagcccgcatcatctcccaatatagaaggaccgctaattactcttcaagaacgacaaatagatgatggaatggctcttcacgcttctgat |
47896061 |
T |
|
| Q |
101 |
acagcacacctccaatgcgataacattcctagaaaggtgaataacggacactctttatccatagatgaccgcagcaacatgaaaagtttgactggtggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896062 |
acagcacacctccaatgcgataacattcctagaaaggtgaataacggacactctttatccatagatgaccgcagcaacatgaaaagtttgactggtggag |
47896161 |
T |
|
| Q |
201 |
gtctagatgattctcagcagttagtcc |
227 |
Q |
| |
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|| |||||||||||||||||||||||| |
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| T |
47896162 |
gtatagatgattctcagcagttagtcc |
47896188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 31219256 - 31219041
Alignment:
| Q |
1 |
aaaagtgaaagagcccgcatcatctcccaatatagaaggaccgctgattactcttcaagaacgacaaatagatgatggaatggctcttcacgcttctgat |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31219256 |
aaaagtgaaagagtccgcatcatctcccaatatagaaggaccgctgattactcttcaagaacgacaaatagatgat----------ttcacgcttctgat |
31219167 |
T |
|
| Q |
101 |
acagcacacctccaatgcgataacattcctagaaaggtgaataacggacactctttatccatagatgaccgcagcaacatgaaaagtttgactggtggag |
200 |
Q |
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| T |
31219166 |
acagcacac-tccaatgcgataacattcctagaaaggtgaataacggacactctttatccatagatgaccgcaacaacatggaaagtttgactggtggag |
31219068 |
T |
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| Q |
201 |
gtctagatgattctcagcagttagtcc |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
31219067 |
gtctagatgattctcagcagttagtcc |
31219041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 31213501 - 31213286
Alignment:
| Q |
1 |
aaaagtgaaagagcccgcatcatctcccaatatagaaggaccgctgattactcttcaagaacgacaaatagatgatggaatggctcttcacgcttctgat |
100 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31213501 |
aaaagtgaaagagtccgcatcatctcccaatatagaaggaccgctgattactcttcaagaacgacaaatagatgat----------ttcacgcttctgat |
31213412 |
T |
|
| Q |
101 |
acagcacacctccaatgcgataacattcctagaaaggtgaataacggacactctttatccatagatgaccgcagcaacatgaaaagtttgactggtggag |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
31213411 |
acagcacac-tccaatgcgataacattcctagaaaggtgaataacggacactctttatccatagatgaccgcaacaacatggaaagtttgactggtggag |
31213313 |
T |
|
| Q |
201 |
gtctagatgattctcagcagttagtcc |
227 |
Q |
| |
|
||||||||||||||||||||| ||||| |
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|
| T |
31213312 |
gtctagatgattctcagcagtcagtcc |
31213286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 4958739 - 4958532
Alignment:
| Q |
20 |
tcatctcccaatatagaaggaccgctgattactcttcaagaacgacaaatagatgatggaatggctcttcacgcttctgatacagcacacctccaatgcg |
119 |
Q |
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|||||||| ||||||||||||||| | || ||||||||||||||||||||| |||||| ||||| ||||| |||||||||||||||||||||||| || |
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| T |
4958739 |
tcatctcctaatatagaaggaccgatagttgctcttcaagaacgacaaatagcagatggagtggcttttcactcttctgatacagcacacctccaatccg |
4958640 |
T |
|
| Q |
120 |
ataacattcctagaaaggtgaataacggacactctttatccatagatgaccgcagcaacatgaaaagtttgactggtggaggtctagatgattctcagca |
219 |
Q |
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|||||||| | ||| ||| ||||| | | | ||||||||||||||||| | |||| ||||| |||| |||||||| ||||||| |||||||||||| || |
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| T |
4958639 |
ataacattgccagagaggggaatactgaatattctttatccatagatgaacacagctacatggaaagcttgactgggggaggtccagatgattctcaaca |
4958540 |
T |
|
| Q |
220 |
gttagtcc |
227 |
Q |
| |
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|| ||||| |
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| T |
4958539 |
gtcagtcc |
4958532 |
T |
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