View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9463_high_11 (Length: 230)
Name: NF9463_high_11
Description: NF9463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9463_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 18219177 - 18219375
Alignment:
| Q |
1 |
tttctatctttgctgctttgtcctctgctgctctgcttcctactaccatttgtgtgtcttctgattttgnnnnnnngacattattacctttctcttcctc |
100 |
Q |
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| T |
18219177 |
tttctatctttgctgctttgtcctctgctgctctgcttcctactaccatttgtgtgtctgctgattttgtttttttgacattattacctttctcttc--- |
18219273 |
T |
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| Q |
101 |
ccttgtctcttgtccaatgctttctgtcaatgatgttggtcctagcaataacgctggtggtgttaatgattctgacatttgtggttcttctactagtgtt |
200 |
Q |
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| T |
18219274 |
------------tccaatgttttctgtcaatgatgttggtccaagcaataacactggtggtgttaatgattctgacatttgtggttcttctactagtgtt |
18219361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 43011096 - 43011226
Alignment:
| Q |
31 |
ctctgcttcctactaccatttgtgtgtcttctgattttgnnnnnnngacattattacctttctcttcctcccttgtctcttgtccaatgctttctgtcaa |
130 |
Q |
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| T |
43011096 |
ctctgcttcctactaccatttgtgtgtctgctgattttgttttgttcacgttagtacctttctcttcctcccttgtctcatgtccaatgttttctgtcaa |
43011195 |
T |
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| Q |
131 |
tgatgttggtcctagcaataacgctggtggt |
161 |
Q |
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| T |
43011196 |
tgatgttggtccaagcaatgacgctggtggt |
43011226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 43011222 - 43011255
Alignment:
| Q |
181 |
gtggttcttctactagtgttggtttcagcattcc |
214 |
Q |
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| T |
43011222 |
gtggttcttctactagtgttggtttcagcattcc |
43011255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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