View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9463_high_3 (Length: 430)

Name: NF9463_high_3
Description: NF9463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9463_high_3
NF9463_high_3
[»] chr7 (4 HSPs)
chr7 (13-419)||(13783343-13783746)
chr7 (81-130)||(5609979-5610028)
chr7 (321-419)||(21588342-21588440)
chr7 (383-419)||(7097611-7097647)
[»] scaffold0251 (1 HSPs)
scaffold0251 (13-419)||(2428-2831)
[»] chr3 (1 HSPs)
chr3 (13-419)||(15789515-15789918)
[»] chr5 (4 HSPs)
chr5 (13-417)||(8724182-8724583)
chr5 (13-354)||(13065700-13066038)
chr5 (380-419)||(13065662-13065701)
chr5 (78-140)||(11619620-11619682)
[»] chr4 (2 HSPs)
chr4 (334-419)||(20089249-20089334)
chr4 (13-140)||(20089499-20089622)
[»] chr6 (2 HSPs)
chr6 (214-262)||(10515825-10515873)
chr6 (71-130)||(10515694-10515753)
[»] chr1 (2 HSPs)
chr1 (71-131)||(11644349-11644409)
chr1 (205-268)||(11644471-11644534)
[»] chr2 (1 HSPs)
chr2 (358-419)||(21085189-21085250)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 419
Target Start/End: Original strand, 13783343 - 13783746
Alignment:
Q  13 atctggaaagctagaaaccttaagttgtggtaagtaacaagtgacagactcacccacgacaatcatggaaagagctaaccatcttttagaaggttggaga 112  Q
    |||||||||||||||||||||||||||||| ||    ||||||||||| |||||||| ||||| |||| |||||||| ||||||||||||||||||||||    
T  13783343 atctggaaagctagaaaccttaagttgtggcaa----caagtgacagattcacccacaacaatgatggtaagagctatccatcttttagaaggttggaga 13783438  T
Q  113 agtgctaatcgtaagcaaaatccgacaaatcaaagtaacattgctaccactcttcctcacaatcacaataaccaggtagtagatggagattcaaacatca 212  Q
    |||||||||||||||||||||||| | ||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13783439 agtgctaatcgtaagcaaaatccgtctaatcaaagtcacattgataccactcttcctcgcaatcacaataaccaggtagtagatggagattcaaacatca 13783538  T
Q  213 gatggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctccttttcagacgtcaacaacaagattggtttgtgcatgtgtattagagattc 312  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13783539 gatggaggaaacctagaagtggcagactcaagtgtaacgttgatgcctccttttcagacgtcaacaacaagattggtttgggcatgtgtattagagattc 13783638  T
Q  313 aacagga-tccatgtccgatccaaaatcacatgtttctctccgttgtgctctgttgatgttggagaggcgctgagactgtatcatgcaattcggtggatc 411  Q
    ||||||| ||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13783639 aacaggattccatgtccgatccaaaattatgtgtttctctccgttgtgctctgttgatgttggagaggcgctgggactgtatcatgcaattcggtggatc 13783738  T
Q  412 catgaact 419  Q
    ||||||||    
T  13783739 catgaact 13783746  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 5610028 - 5609979
Alignment:
Q  81 aaagagctaaccatcttttagaaggttggagaagtgctaatcgtaagcaa 130  Q
    ||||||| || |||||  ||||||||||||||||||||||||||||||||    
T  5610028 aaagagcaaaacatctactagaaggttggagaagtgctaatcgtaagcaa 5609979  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 419
Target Start/End: Complemental strand, 21588440 - 21588342
Alignment:
Q  321 ccatgtccgatccaaaatcacatgtttctctccgttgtgctctgttgatgttggagaggcgctgagactgtatcatgcaattcggtggatccatgaact 419  Q
    |||||| || || |||| || ||| ||| |||| ||||||||||||||  |||| ||||| |||   || |||||||||||||||||||| ||||||||    
T  21588440 ccatgttcgctcaaaaaccatatggttcactccattgtgctctgttgacattggggaggccctggttctatatcatgcaattcggtggattcatgaact 21588342  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 419
Target Start/End: Complemental strand, 7097647 - 7097611
Alignment:
Q  383 tgagactgtatcatgcaattcggtggatccatgaact 419  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  7097647 tgagactttatcatgcaattcggtggatcaatgaact 7097611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 419
Target Start/End: Complemental strand, 2831 - 2428
Alignment:
Q  13 atctggaaagctagaaaccttaagttgtggtaagtaacaagtgacagactcacccacgacaatcatggaaagagctaaccatcttttagaaggttggaga 112  Q
    |||||||||||||||||||||||||||||| ||    ||||||||||| ||| | || |||||||||| |||||||| ||||||||||||||||||||||    
T  2831 atctggaaagctagaaaccttaagttgtggcaa----caagtgacagattcaacgacaacaatcatggtaagagctatccatcttttagaaggttggaga 2736  T
Q  113 agtgctaatcgtaagcaaaatccgacaaatcaaagtaacattgctaccactcttcctcacaatcacaataaccaggtagtagatggagattcaaacatca 212  Q
    |||||||||||||||||||||||| | ||||| ||| |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||     
T  2735 agtgctaatcgtaagcaaaatccgtctaatcatagtcacattgataccactcttcctcgcaatcacactaaccaggtagtagatggagattcaaacatcc 2636  T
Q  213 gatggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctccttttcagacgtcaacaacaagattggtttgtgcatgtgtattagagattc 312  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2635 gatggaggaaacctagaagtggcagactcaagtgtaatgttgatgcctctttttcagacgtcaacaacaagattggtttgggcatgtgtattagagattc 2536  T
Q  313 aacaggat-ccatgtccgatccaaaatcacatgtttctctccgttgtgctctgttgatgttggagaggcgctgagactgtatcatgcaattcggtggatc 411  Q
    |||||||| |||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  2535 aacaggatcccatgtccgatcaaaaatcatgtgtttctctccgttgtgctctgttgatgttggagaggcgctcggactgtatcatgcaattcggtggatc 2436  T
Q  412 catgaact 419  Q
    ||||||||    
T  2435 catgaact 2428  T

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Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 419
Target Start/End: Original strand, 15789515 - 15789918
Alignment:
Q  13 atctggaaagctagaaaccttaagttgtggtaagtaacaagtgacagactcacccacgacaatcatggaaagagctaaccatcttttagaaggttggaga 112  Q
    |||||||||||||| ||||||||||||||| ||    ||||||||||| |||||||| |||||| ||| |||||||| ||||||||||||||||||||||    
T  15789515 atctggaaagctaggaaccttaagttgtggcaa----caagtgacagattcacccacaacaatcttggtaagagctacccatcttttagaaggttggaga 15789610  T
Q  113 agtgctaatcgtaagcaaaatccgacaaatcaaagtaacattgctaccactcttcctcacaatcacaataaccaggtagtagatggagattcaaacatca 212  Q
    |||||||||||||| ||||||||| | ||||||||| |||||| |||||| |||||||  || ||||||| ||||||||||||||||| ||| |||||||    
T  15789611 agtgctaatcgtaaacaaaatccgcctaatcaaagtcacattgataccacccttcctcgtaaccacaatatccaggtagtagatggagtttctaacatca 15789710  T
Q  213 gatggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctccttttcagacgtcaacaacaagattggtttgtgcatgtgtattagagattc 312  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  15789711 gatggaggaaacctagaagtggtagactcaagtgtaatgttgatgcatcattttcagaagtcaacaacaagattggtttgggcatgtgtattagagattc 15789810  T
Q  313 aacaggat-ccatgtccgatccaaaatcacatgtttctctccgttgtgctctgttgatgttggagaggcgctgagactgtatcatgcaattcggtggatc 411  Q
    |||||||| ||||||||||| ||||||||  | ||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  15789811 aacaggatcccatgtccgattcaaaatcatgtttttctctccgttgtgctctgtggatgttggagaggcgctggggctgtatcatgcaattcggtggatc 15789910  T
Q  412 catgaact 419  Q
    ||||||||    
T  15789911 catgaact 15789918  T

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Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 417
Target Start/End: Original strand, 8724182 - 8724583
Alignment:
Q  13 atctggaaagctagaaaccttaagttgtggtaagtaacaagtgacagactcacccacgacaatcatggaaagagctaaccatcttttagaaggttggaga 112  Q
    |||||||||||||| ||||||||||||||| ||    ||||||||||| |||||||| |||||| ||| |||||||| ||||||||||||||||||||||    
T  8724182 atctggaaagctaggaaccttaagttgtggcaa----caagtgacagattcacccacaacaatcttggtaagagctacccatcttttagaaggttggaga 8724277  T
Q  113 agtgctaatcgtaagcaaaatccgacaaatcaaagtaacattgctaccactcttcctcacaatcacaataaccaggtagtagatggagattcaaacatca 212  Q
    |||||||||||||| ||||||||  | ||||||||| |||||| |||||| |||||||  || ||||||| ||||||||||||||||| ||| |||||||    
T  8724278 agtgctaatcgtaaacaaaatcctcctaatcaaagtcacattgataccacccttcctcgtaaccacaatatccaggtagtagatggagtttctaacatca 8724377  T
Q  213 gatggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctccttttcagacgtcaacaacaagattggtttgtgcatgtgtattagagattc 312  Q
    |||||||||||||||||||||| ||| |||||||||| |||||||| || |||||||| ||||||||||||||||||||| |||| ||||||||||||||    
T  8724378 gatggaggaaacctagaagtggtagactcaagtgtaacgttgatgcatcattttcagaagtcaacaacaagattggtttgggcatatgtattagagattc 8724477  T
Q  313 aacaggat-ccatgtccgatccaaaatcacatgtttctctccgttgtgctctgttgatgttggagaggcgctgagactgtatcatgcaattcggtggatc 411  Q
    |||||||| ||||||||||||||||||||  | ||||||||||||||||| ||| |||||||||||||||||| |  |||||||||||||||||||||||    
T  8724478 aacaggatcccatgtccgatccaaaatcatgtttttctctccgttgtgctatgtggatgttggagaggcgctggggttgtatcatgcaattcggtggatc 8724577  T
Q  412 catgaa 417  Q
    ||||||    
T  8724578 catgaa 8724583  T

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Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 13066038 - 13065700
Alignment:
Q  13 atctggaaagctagaaaccttaagttgtggtaagtaacaagtgacagactcacccacgacaatcatggaaagagctaaccatcttttagaaggttggaga 112  Q
    |||||||||||||||||||||||||||||| ||    ||||||||||| ||| |||| |||||||||| |||||||| ||||||||||||||||||||||    
T  13066038 atctggaaagctagaaaccttaagttgtggcaa----caagtgacagattcaaccacaacaatcatggtaagagctatccatcttttagaaggttggaga 13065943  T
Q  113 agtgctaatcgtaagcaaaatccgacaaatcaaagtaacattgctaccactcttcctcacaatcacaataaccaggtagtagatggagattcaaacatca 212  Q
    |||||||||||||||||||||||| | ||||| ||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  13065942 agtgctaatcgtaagcaaaatccgtctaatcatagtcacattgataccactcttcctcgcaatcacactaaccaggtagtagatggagattcaaacatca 13065843  T
Q  213 gatggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctccttttcagacgtcaacaacaagattggtttgtgcatgtgtattagagattc 312  Q
    |||||||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13065842 gatggaggaaacctagaagtggcagactcaagtgtaacattgatgcctctttttcagacgtcaacaacaagattggtttgggcatgtgtattagagattc 13065743  T
Q  313 aacagga-tccatgtccgatccaaaatcacatgtttctctccg 354  Q
    || |||| ||||||||||||| |||||||  ||||||||||||    
T  13065742 aaaaggattccatgtccgatcaaaaatcatgtgtttctctccg 13065700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 419
Target Start/End: Complemental strand, 13065701 - 13065662
Alignment:
Q  380 cgctgagactgtatcatgcaattcggtggatccatgaact 419  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  13065701 cgctgggactgtatcatgcaattcggtggatccatgaact 13065662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 11619682 - 11619620
Alignment:
Q  78 tggaaagagctaaccatcttttagaaggttggagaagtgctaatcgtaagcaaaatccgacaa 140  Q
    ||||||||||||| || ||||||||||||| |||   ||| ||||||||||||||||| ||||    
T  11619682 tggaaagagctaaacaccttttagaaggttagagggatgcgaatcgtaagcaaaatcccacaa 11619620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 334 - 419
Target Start/End: Complemental strand, 20089334 - 20089249
Alignment:
Q  334 aaaatcacatgtttctctccgttgtgctctgttgatgttggagaggcgctgagactgtatcatgcaattcggtggatccatgaact 419  Q
    |||||||| || ||| |||| ||||||||| |||||||||||||||| ||| | || |||||||||||||||||||| ||||||||    
T  20089334 aaaatcacgtggttcactccattgtgctctattgatgttggagaggccctgtgtctttatcatgcaattcggtggattcatgaact 20089249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 20089622 - 20089499
Alignment:
Q  13 atctggaaagctagaaaccttaagttgtggtaagtaacaagtgacagactcacccacgacaatcatggaaagagctaaccatcttttagaaggttggaga 112  Q
    ||||||||||||||||||||||| |||||| ||    || ||| |||| |||  ||  |||||| |||||||||||||  | |||||||||||||||||     
T  20089622 atctggaaagctagaaaccttaatttgtggcaa----catgtgtcagattcaaacataacaatcctggaaagagctaagtaccttttagaaggttggagg 20089527  T
Q  113 agtgctaatcgtaagcaaaatccgacaa 140  Q
    | || |||||| ||||||| ||| ||||    
T  20089526 aatgttaatcgcaagcaaagtcctacaa 20089499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 10515825 - 10515873
Alignment:
Q  214 atggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctcc 262  Q
    |||||||||||| |||||||| |||| ||| ||||||||||||||||||    
T  10515825 atggaggaaaccgagaagtggtagatacaaatgtaatgttgatgcctcc 10515873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 10515694 - 10515753
Alignment:
Q  71 acaatcatggaaagagctaaccatcttttagaaggttggagaagtgctaatcgtaagcaa 130  Q
    ||||||||| ||||||| || || |||||||||||||||||||  ||||| |||||||||    
T  10515694 acaatcatgaaaagagcaaaacaccttttagaaggttggagaaacgctaaccgtaagcaa 10515753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 11644349 - 11644409
Alignment:
Q  71 acaatcatggaaagagctaaccatcttttagaaggttggagaagtgctaatcgtaagcaaa 131  Q
    |||||| |||||||||| || || ||| ||||||| ||||||| |||||||||||||||||    
T  11644349 acaatcctggaaagagcaaaacaccttctagaaggctggagaaatgctaatcgtaagcaaa 11644409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 11644471 - 11644534
Alignment:
Q  205 aaacatcagatggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctccttttca 268  Q
    |||| |||||||||||||||| |||||||||||||  || || ||| | |||||||||||||||    
T  11644471 aaacttcagatggaggaaaccgagaagtggcagatataaatgcaatatcgatgcctccttttca 11644534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 21085250 - 21085189
Alignment:
Q  358 tgctctgttgatgttggagaggcgctgagactgtatcatgcaattcggtggatccatgaact 419  Q
    |||||||| |||||||| ||||| |||| | | ||||| || ||||||||||||||||||||    
T  21085250 tgctctgtggatgttggggaggctctgacattatatcacgcgattcggtggatccatgaact 21085189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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