View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9463_low_10 (Length: 409)
Name: NF9463_low_10
Description: NF9463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9463_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 23 - 396
Target Start/End: Original strand, 40666359 - 40666733
Alignment:
| Q |
23 |
tgcagtattaataagggttttcaatttcctcaaattttcagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaaaatactca |
122 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666359 |
tgcagtattaataaggtttttcaatttcctcaaattttcagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaaaatactca |
40666458 |
T |
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| Q |
123 |
tgggtatgttggtgctgaccttgctgctctttgcactgaagctgctctccaatgcattagggagaagatggacgtcattgacttagaggatgagactatt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666459 |
tgggtatgttggtgctgaccttgctgctctttgcactgaagctgctctacaatgcattagggagaagatggacgtcattgacttagaggatgagactatt |
40666558 |
T |
|
| Q |
223 |
gatgctgaaatactaaattccatggcagttacaaatgagcatttgcatactgcacttggaacaagcaacccatcagctctacgcgaaactgttag-tttt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40666559 |
gatgctgaaatactaaattccatggcagttacaaatgagcatttgcatactgcacttggaacaagcaacccatcagctctacgcgaaactgttagttttt |
40666658 |
T |
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| Q |
322 |
ttatacgactcctatatttagaaatcattagttgattacttcatcagtcaatgggtcattccttttttgctgtct |
396 |
Q |
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| T |
40666659 |
ttatacgactcctatatttagaaatcattagttgattacttgatcagtcaatgggtcattccttttttgctgtct |
40666733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 40 - 396
Target Start/End: Complemental strand, 40723629 - 40723272
Alignment:
| Q |
40 |
ttttcaatttcctcaaattttcagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaaaatactcatgggtatgttggtgctg |
139 |
Q |
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| T |
40723629 |
ttttcgatttcctcaaattttcattcgcacatttacgacttt-ctctgtaggttgatttggagagaatttcaaaagatactcatgggtatgttggtgctg |
40723531 |
T |
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| Q |
140 |
accttgctgctctttgcactgaagctgctctccaatgcattagggagaagatggacgtcattgacttagaggatgagactattgatgctgaaatactaaa |
239 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723530 |
accttgctgctctttgcactgaagctgctctacaatgcattagggagaagatggacgtcattgacttagaggatgagactattgatgctgaaatactaaa |
40723431 |
T |
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| Q |
240 |
ttccatggcagttacaaatgagcatttgcatactgcacttggaacaagcaacccatcagctctacgcgaaactgtta--gttttttatacgactcctata |
337 |
Q |
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||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| ||||| | | ||||||||||| |
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| T |
40723430 |
ttctatggcagttacaaatgagcatttccataccgcacttggaacaagcaacccatcagctctacgtgaaactgttagtgttttctttccgactcctata |
40723331 |
T |
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| Q |
338 |
tttagaaatcattagttgattacttcatcagtcaatgggtcattccttttttgctgtct |
396 |
Q |
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| T |
40723330 |
tttagaaatcattagttgattacttgatcagtcaatgagtcattccttttttgttgtct |
40723272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 121 - 266
Target Start/End: Complemental strand, 41092540 - 41092395
Alignment:
| Q |
121 |
catgggtatgttggtgctgaccttgctgctctttgcactgaagctgctctccaatgcattagggagaagatggacgtcattgacttagaggatgagacta |
220 |
Q |
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||||| |||||||||||||| | |||||| | || || ||||| || || |||||||| ||||| || |||||||| |||||||| || |||||||| | |
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| T |
41092540 |
catggctatgttggtgctgatttagctgctttgtgtaccgaagcagcacttcaatgcatcagggaaaaaatggacgtgattgacttggaagatgagacaa |
41092441 |
T |
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| Q |
221 |
ttgatgctgaaatactaaattccatggcagttacaaatgagcattt |
266 |
Q |
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|||||||||||||| | || ||||||||||| |||||||||||||| |
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| T |
41092440 |
ttgatgctgaaatattgaactccatggcagtgacaaatgagcattt |
41092395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 311
Target Start/End: Original strand, 27977761 - 27977951
Alignment:
| Q |
121 |
catgggtatgttggtgctgaccttgctgctctttgcactgaagctgctctccaatgcattagggagaagatggacgtcattgacttagaggatgagacta |
220 |
Q |
| |
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||||| |||||||||||||| | |||||| | || ||||| ||||| || || ||||| || ||||| ||||| || |||||| |||| ||||| || | |
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| T |
27977761 |
catggttatgttggtgctgatttagctgctttgtgtactgaggctgcacttcagtgcatcagagagaaaatggatgtgattgacctagaagatgaaacca |
27977860 |
T |
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| Q |
221 |
ttgatgctgaaatactaaattccatggcagttacaaatgagcatttgcatactgcacttggaacaagcaacccatcagctctacgcgaaac |
311 |
Q |
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|||||||||| ||||| || || ||||| || |||||||| ||||| ||| ||||||||| ||||||| || || ||||| || ||||| |
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| T |
27977861 |
ttgatgctgagatacttaactcaatggcggtcacaaatgaacatttcagtaccgcacttggatcaagcaatccttctgctctccgtgaaac |
27977951 |
T |
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