View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9463_low_12 (Length: 313)

Name: NF9463_low_12
Description: NF9463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9463_low_12
NF9463_low_12
[»] chr3 (12 HSPs)
chr3 (1-308)||(41985641-41985951)
chr3 (30-308)||(41980867-41981151)
chr3 (99-308)||(9448327-9448536)
chr3 (105-308)||(9343858-9344061)
chr3 (205-304)||(9695616-9695715)
chr3 (219-308)||(9494822-9494911)
chr3 (205-308)||(9336553-9336656)
chr3 (114-157)||(9377229-9377272)
chr3 (121-163)||(9626420-9626462)
chr3 (114-151)||(9416716-9416753)
chr3 (114-151)||(13864413-13864450)
chr3 (114-154)||(9756535-9756575)
[»] chr8 (2 HSPs)
chr8 (1-281)||(13170480-13170760)
chr8 (29-288)||(44688606-44688868)
[»] chr1 (2 HSPs)
chr1 (1-308)||(18991217-18991521)
chr1 (114-163)||(4440018-4440067)
[»] chr2 (1 HSPs)
chr2 (208-308)||(20694304-20694404)
[»] chr6 (2 HSPs)
chr6 (223-284)||(7012857-7012918)
chr6 (205-308)||(7041509-7041612)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 41985951 - 41985641
Alignment:
Q  1 tctgcgtgtttaaagatcggatttatgcagtcaataaaattggtcggacagttgcttttggaccgcactatagtgtccaattagtggctgaatatgtgga 100  Q
    |||||||||||||||| ||| ||| |||||| |||||||||||  |||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||    
T  41985951 tctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttggaccggactatagtgtcgagttattggctgaatatgtgga 41985852  T
Q  101 tggaggggacatgaaattcctggtggagagtgagggtga---gttgttgctagtggacatctatgactctcattgttttgggttccccggtgaagatggt 197  Q
    |||||||||||||||||||||||| ||||||||||||||   |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||    
T  41985851 tggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgttttggtttccccggtgaagatggt 41985752  T
Q  198 ttaaagcttgatgtgttcagacttgatgagaaggagaaggaatgggtcaggttgacaagtttaggggatagaattctgttcttggggaatggttgttcgt 297  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | ||||||||||||||| || |||||||||||||||| |||||||    
T  41985751 ttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgt 41985652  T
Q  298 tctctgcttct 308  Q
    | |||||||||    
T  41985651 tttctgcttct 41985641  T

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Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 30 - 308
Target Start/End: Complemental strand, 41981151 - 41980867
Alignment:
Q  30 gtcaataaaattggtcggacagttgcttttggaccgcactatagtgtccaattagtggctgaatatgtgg---atggagg---ggacatgaaattcctgg 123  Q
    |||||||||  |||||||||| ||||  |||||||  ||||||||||||| ||||||||||||||| |||   |||||||   |||  ||||||||||||    
T  41981151 gtcaataaaggtggtcggacatttgcgattggaccagactatagtgtccagttagtggctgaatatttggtgtatggaggaggggatgtgaaattcctgg 41981052  T
Q  124 tggagagtgagggtgagttgttgctagtggacatctatgactctcattgttttgggttccccggtgaagatggtttaaagcttgatgtgttcagacttga 223  Q
    | |||||||||||||| || |||||||||||||| ||| ||||||||||| |||||||||| |||||||||||||| || ||||||||||| || ||||     
T  41981051 tagagagtgagggtgaattattgctagtggacatttatcactctcattgtgttgggttccctggtgaagatggtttcaatcttgatgtgtttaggcttgc 41980952  T
Q  224 tgagaaggagaaggaatgggtcaggttgacaagtttaggggatagaattctgttcttggggaatggttgttcgttctctgcttct 308  Q
    | |||| |||||| ||||||||| |||||| ||||||||||||||| || |||||||||||||||| |||||||| | |||||||    
T  41980951 taagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttttgcttct 41980867  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 308
Target Start/End: Complemental strand, 9448536 - 9448327
Alignment:
Q  99 gatggaggggacatgaaattcctggtggagagtgagggtgagttgttgctagtggacatctatgactctcattgttttgggttccccggtgaagatggtt 198  Q
    |||||||||||||| |||||| | || || || ||||| || ||||||||||||||||| ||||| | |  |||||| | |||||| |||   |||| |     
T  9448536 gatggaggggacataaaattcttagttgatagagagggagacttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgcta 9448437  T
Q  199 taaagcttgatgtgttcagacttgatgagaaggagaaggaatgggtcaggttgacaagtttaggggatagaattctgttcttggggaatggttgttcgtt 298  Q
    ||| | |||||||||| |  ||| |||||||||||||| ||||||| | ||| |||| ||||||||||||  || |||||||||||||||  ||||||||    
T  9448436 taagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgtt 9448337  T
Q  299 ctctgcttct 308  Q
     |||||||||    
T  9448336 ttctgcttct 9448327  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 105 - 308
Target Start/End: Complemental strand, 9344061 - 9343858
Alignment:
Q  105 ggggacatgaaattcctggtggagagtgagggtgagttgttgctagtggacatctatgactctcattgttttgggttccccggtgaagatggtttaaagc 204  Q
    |||||||  |||||| | || ||||| ||||| |||||||||||||||||||| ||||| | |  |||||| | |||||| |||   |||| | ||| |     
T  9344061 ggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgctataaggg 9343962  T
Q  205 ttgatgtgttcagacttgatgagaaggagaaggaatgggtcaggttgacaagtttaggggatagaattctgttcttggggaatggttgttcgttctctgc 304  Q
    |||||||||| |  |||||||||| ||||||| | ||||| | ||| |||| ||||||||||||  || |||||||||||||||  |||||||| |||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  305 ttct 308  Q
    ||||    
T  9343861 ttct 9343858  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 304
Target Start/End: Original strand, 9695616 - 9695715
Alignment:
Q  205 ttgatgtgttcagacttgatgagaaggagaaggaatgggtcaggttgacaagtttaggggatagaattctgttcttggggaatggttgttcgttctctgc 304  Q
    ||||||| ||||| |||||||||||||||||| | ||||||| |||||| | ||||||||||||  || |||| |||||| | |  ||||||||||||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 308
Target Start/End: Original strand, 9494822 - 9494911
Alignment:
Q  219 cttgatgagaaggagaaggaatgggtcaggttgacaagtttaggggatagaattctgttcttggggaatggttgttcgttctctgcttct 308  Q
    |||||||||||||||| |  |||||| |  ||||  ||||||||||||||  || |||||||||||||||| |||||||| |||||||||    
T  9494822 cttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttct 9494911  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 308
Target Start/End: Complemental strand, 9336656 - 9336553
Alignment:
Q  205 ttgatgtgttcagacttgatgagaaggagaaggaatgggtcaggttgacaagtttaggggatagaattctgttcttggggaatggttgttcgttctctgc 304  Q
    |||||||||| || ||||||||||| |||||    ||||||| | |||| | |||||| ||||   || |||||||||||||||| |||||||| |||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  305 ttct 308  Q
    ||||    
T  9336556 ttct 9336553  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 9377272 - 9377229
Alignment:
Q  114 aaattcctggtggagagtgagggtgagttgttgctagtggacat 157  Q
    ||||| ||||||||||||||||||||||||||| || |||||||    
T  9377272 aaattgctggtggagagtgagggtgagttgttgttactggacat 9377229  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 9626420 - 9626462
Alignment:
Q  121 tggtggagagtgagggtgagttgttgctagtggacatctatga 163  Q
    ||||||||||||| |||||||||||| |||||||||| |||||    
T  9626420 tggtggagagtgacggtgagttgttgttagtggacatttatga 9626462  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 9416753 - 9416716
Alignment:
Q  114 aaattcctggtggagagtgagggtgagttgttgctagt 151  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  9416753 aaattactggtggagagtgagggtgagttgttgttagt 9416716  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 13864450 - 13864413
Alignment:
Q  114 aaattcctggtggagagtgagggtgagttgttgctagt 151  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  13864450 aaattcttggtggagagtgatggtgagttgttgctagt 13864413  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 9756575 - 9756535
Alignment:
Q  114 aaattcctggtggagagtgagggtgagttgttgctagtgga 154  Q
    |||||| |||||||||||||  |||||||||||||||||||    
T  9756575 aaattcttggtggagagtgaatgtgagttgttgctagtgga 9756535  T

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Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 13170480 - 13170760
Alignment:
Q  1 tctgcgtgtttaaagatcggatttatgcagtcaataaaattggtcggacagttgcttttggaccgcactatagtgtccaattagtggctgaatatgtgga 100  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||  | |||||||  | ||| || |||||||||||||    
T  13170480 tctgcatgtttaaagatcggttttgtgcagtcaataaaattggtcggacagttgcttttggaccgggcgatagtgttgagttattgactgaatatgtgga 13170579  T
Q  101 tggaggggacatgaaattcctggtggagagtgagggtgagttgttgctagtggacatctatgactctcattgttttgggttccccggtgaagatggttta 200  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||  || ||||| |||||| ||||||||    
T  13170580 tggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgaccctcatcgttacggtttccctggtgaatatggttta 13170679  T
Q  201 aagcttgatgtgttcagacttgatgagaaggagaaggaatgggtcaggttgacaagtttaggggatagaattctgttcttg 281  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||| |||| | ||||||||||| |||||| | ||||||    
T  13170680 aagcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttaggggaaagaattattttcttg 13170760  T

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Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 29 - 288
Target Start/End: Original strand, 44688606 - 44688868
Alignment:
Q  29 agtcaataaaattggtcggacagttgcttttggacc---gcactatagtgtccaattagtggctgaatatgtggatggaggggacatgaaattcctggtg 125  Q
    |||||||||||||||||||||| |||||| |||| |   | ||| |||||| |||  ||||||| || |||| |||||||||||||| |||||||||||     
T  44688606 agtcaataaaattggtcggacatttgcttatggagcagcggactttagtgtgcaacaagtggctaaacatgttgatggaggggacataaaattcctggta 44688705  T
Q  126 gagagtgagggtgagttgttgctagtggacatctatgactctcattgttttgggttccccggtgaagatggtttaaagcttgatgtgttcagacttgatg 225  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||  ||||||||||||||  ||  |||    
T  44688706 gagagtgaaggtgagttgttgctagtggacatctatgactctcatggttttgggttcccgggtgaagatggtctacggcttgatgtgttcacgctcaatg 44688805  T
Q  226 agaaggagaaggaatgggtcaggttgacaagtttaggggatagaattctgttcttggggaatg 288  Q
    ||||| | ||| ||||||| | ||| || ||||||||| |||||||| |||||||||||||||    
T  44688806 agaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatg 44688868  T

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Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 18991521 - 18991217
Alignment:
Q  1 tctgcgtgtttaaagatcggatttatgcagtcaataaaattggtcggacagttgcttttggaccgcactatagtgtccaattagtggctgaatatgtgga 100  Q
    |||||||||||||||| ||| ||||||| || |||||||||||| |||||||||| ||||||  | ||||||||||  | |||||||||||||||||| |    
T  18991521 tctgcgtgtttaaagagcggttttatgcggttaataaaattggtaggacagttgcgtttggattggactatagtgttgagttagtggctgaatatgtgaa 18991422  T
Q  101 tggaggggacatgaaattcctggtggagagtgagggtgagttgttgctagtggacatctatgactctcattgttttgggttccccggtgaagatggttta 200  Q
    ||||||||| ||||||||| |||| ||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| || ||| | ||| ||    
T  18991421 tggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgactcgcattgttttgggttccctggcgaaaaaggtcta 18991322  T
Q  201 aagcttgatgtgttcagacttgatgagaaggagaaggaatgggtcaggttgacaagtttaggggatagaattctgttcttggggaatggttgttcgttct 300  Q
    || ||  | ||||| || ||| ||||||   |||||||||||   |||| ||  || |||||| ||||  || |||||||||||||||| |||||||| |    
T  18991321 aaactgaaggtgtttaggcttaatgagagaaagaaggaatgg---aggtcgaagagcttagggaatagggttttgttcttggggaatggatgttcgtttt 18991225  T
Q  301 ctgcttct 308  Q
    ||||||||    
T  18991224 ctgcttct 18991217  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 4440067 - 4440018
Alignment:
Q  114 aaattcctggtggagagtgagggtgagttgttgctagtggacatctatga 163  Q
    |||||| | |||||||||||||||| |||| ||| |||||||||||||||    
T  4440067 aaattcttagtggagagtgagggtgcgttgctgcgagtggacatctatga 4440018  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 20694304 - 20694404
Alignment:
Q  208 atgtgttcagacttgatgagaaggagaaggaatgggtcaggttgacaagtttaggggatagaattctgttcttggggaatggttgttcgttctctgcttc 307  Q
    |||||||||| |||||||| ||||||||| ||||||| || ||||||||||| ||||||||  || |||| ||||||||||| |||||||| ||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T
Q  308 t 308  Q
    |    
T  20694404 t 20694404  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 7012918 - 7012857
Alignment:
Q  223 atgagaaggagaaggaatgggtcaggttgacaagtttaggggatagaattctgttcttgggg 284  Q
    |||||||||||||| | ||||| | ||||||||||||||| ||||| ||| |||||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 7012857  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 308
Target Start/End: Complemental strand, 7041612 - 7041509
Alignment:
Q  205 ttgatgtgttcagacttgatgagaaggagaaggaatgggtcaggttgacaagtttaggggatagaattctgttcttggggaatggttgttcgttctctgc 304  Q
    ||||| |||| | |||| |||||||||||||| | ||||| | |||||| ||||||||||||||  || ||||||||||  | |  |||||||||||||     
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgt 7041513  T
Q  305 ttct 308  Q
    ||||    
T  7041512 ttct 7041509  T

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