View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9463_low_2 (Length: 491)

Name: NF9463_low_2
Description: NF9463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9463_low_2
NF9463_low_2
[»] chr7 (5 HSPs)
chr7 (9-477)||(21182024-21182492)
chr7 (29-173)||(21204806-21204950)
chr7 (18-149)||(21852345-21852476)
chr7 (40-174)||(21209070-21209204)
chr7 (374-403)||(32122296-32122325)
[»] chr1 (1 HSPs)
chr1 (346-402)||(26631688-26631746)
[»] chr3 (1 HSPs)
chr3 (333-393)||(30790779-30790836)
[»] chr8 (1 HSPs)
chr8 (361-398)||(42205349-42205386)
[»] chr6 (1 HSPs)
chr6 (345-393)||(20809087-20809135)
[»] chr4 (3 HSPs)
chr4 (345-402)||(33844164-33844221)
chr4 (353-393)||(14123716-14123756)
chr4 (345-393)||(43072214-43072262)
[»] chr5 (2 HSPs)
chr5 (350-398)||(4445362-4445410)
chr5 (333-385)||(32056166-32056218)
[»] chr2 (1 HSPs)
chr2 (333-397)||(36394574-36394641)


Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 9 - 477
Target Start/End: Original strand, 21182024 - 21182492
Alignment:
Q  9 attatactctttaattttggttttaggagaatggttcaatgcagatactgaggccatcatagcacaagccctgcaaactgggggaggaccaaatgtttct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21182024 attatactctttaattttggttttaggagaatggttcaatgcagatactgaggccatcatagcacaagccctgcaaactgggggaggaccaaatgtttct 21182123  T
Q  109 gaagcctacacaatcaatggacttccagggccattgtataactgctctaaaaaaggtatcaagtgcagataaatatatattctaggaataatccccaatt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||||||||    
T  21182124 gaagcctacacaatcaatggacttccagggccattgtataactgctctaaaaaaggtatcaagtgcagataaatatatcttattgaaataatccccaatt 21182223  T
Q  209 attaaaagaatgaagcaaataattcctaaaattgaaaatatgaagccttaaacgtaactacttataatataatagttgtgttatttgaacatcaacgtgc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21182224 attaaaagaatgaagcaaataattcctaaaattgaaaatatgaagccttaaacgtaactactcataatataatagttgtgttatttgaacatcaacgtgc 21182323  T
Q  309 aaacaccgtgtgtgaaactgtacgtgtttatctctatctcttactttttattttctacaacttaaacacatttaaaaaatacacaaaaatcaaagcatgc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21182324 aaacaccgtgtgtgaaactgtacgtgtttatctctatctcttactttttattttctacaacttaaacacatttaaaaaatacacaaaaatcaaagcatgc 21182423  T
Q  409 tgtattcgacatccaagttttatatcaaaattcatttttctaatacagtattccactttatcacaaaag 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21182424 tgtattcgacatccaagttttatatcaaaattcatttttctaatacagtattccactttatcacaaaag 21182492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 21204806 - 21204950
Alignment:
Q  29 ttttaggagaatggttcaatgcagatactgaggccatcatagcacaagccctgcaaactgggggaggaccaaatgtttctgaagcctacacaatcaatgg 128  Q
    ||||||| |||||||||||||||||| ||||||| |||||||||||||| || |||||||| |||||||||||||| ||||| || |||||||| |||||    
T  21204806 ttttaggtgaatggttcaatgcagatcctgaggcaatcatagcacaagctctccaaactggtggaggaccaaatgtctctgatgcatacacaattaatgg 21204905  T
Q  129 acttccagggccattgtataactgctctaaaaaaggtatcaagtg 173  Q
    ||||||||||||||||||||| || |||   || |||||||||||    
T  21204906 acttccagggccattgtataattgttctgctaatggtatcaagtg 21204950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 21852345 - 21852476
Alignment:
Q  18 tttaattttggttttaggagaatggttcaatgcagatactgaggccatcatagcacaagccctgcaaactgggggaggaccaaatgtttctgaagcctac 117  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||| ||||| |||||||| || |||||||| |||||||||||||| ||||| || ||     
T  21852345 tttaattttggttttaggtgaatggttcaatacagatcctgaggcaatcattgcacaagctctacaaactggtggaggaccaaatgtctctgatgcatat 21852444  T
Q  118 acaatcaatggacttccagggccattgtataa 149  Q
    |||||||||||||||||||| |||||||||||    
T  21852445 acaatcaatggacttccaggaccattgtataa 21852476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 21209070 - 21209204
Alignment:
Q  40 tggttcaatgcagatactgaggccatcatagcacaagccctgcaaactgggggaggaccaaatgtttctgaagcctacacaatcaatggacttccagggc 139  Q
    ||||||||||||||| ||||||| ||||| ||||||||||| |||||||| |||||||||||||| ||||| || |||||||| ||| |||||||||||     
T  21209070 tggttcaatgcagatcctgaggcaatcattgcacaagccctccaaactggtggaggaccaaatgtctctgatgcatacacaattaattgacttccaggga 21209169  T
Q  140 cattgtataactgctctaaaaaaggtatcaagtgc 174  Q
    |||||||||| || |||   |||||| ||||||||    
T  21209170 cattgtataattgttctgctaaaggtttcaagtgc 21209204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 403
Target Start/End: Original strand, 32122296 - 32122325
Alignment:
Q  374 acacatttaaaaaatacacaaaaatcaaag 403  Q
    ||||||||||||||||||||||||||||||    
T  32122296 acacatttaaaaaatacacaaaaatcaaag 32122325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 26631688 - 26631746
Alignment:
Q  346 ctcttactttttattttctacaacttaaacacatttaaaaaatacac--aaaaatcaaa 402  Q
    |||||||||||||| |||||||||||| |||||||| ||||||||||  ||||||||||    
T  26631688 ctcttactttttatattctacaacttacacacattttaaaaatacacgtaaaaatcaaa 26631746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 30790836 - 30790779
Alignment:
Q  333 tgtttatctctatctcttactttttattttctacaacttaaacacatttaaaaaatacaca 393  Q
    ||||||||||||| ||||   |||||| |||||||||||| ||||||||||||||||||||    
T  30790836 tgtttatctctatttctt---ttttatcttctacaacttacacacatttaaaaaatacaca 30790779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 42205386 - 42205349
Alignment:
Q  361 ttctacaacttaaacacatttaaaaaatacacaaaaat 398  Q
    |||||||||||| |||||||||||||||||||||||||    
T  42205386 ttctacaacttacacacatttaaaaaatacacaaaaat 42205349  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 20809135 - 20809087
Alignment:
Q  345 tctcttactttttattttctacaacttaaacacatttaaaaaatacaca 393  Q
    ||||||||||||||| || |||||| || ||||||||||||||||||||    
T  20809135 tctcttactttttatcttttacaacatacacacatttaaaaaatacaca 20809087  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 33844164 - 33844221
Alignment:
Q  345 tctcttactttttattttctacaacttaaacacatttaaaaaatacacaaaaatcaaa 402  Q
    ||||||||| ||||| | ||||||||||||  ||||| ||||||||||||||| ||||    
T  33844164 tctcttactatttatctcctacaacttaaatgcatttcaaaaatacacaaaaaccaaa 33844221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 393
Target Start/End: Original strand, 14123716 - 14123756
Alignment:
Q  353 tttttattttctacaacttaaacacatttaaaaaatacaca 393  Q
    ||||||| |||||||||||| |||||||| |||||||||||    
T  14123716 tttttatcttctacaacttatacacattttaaaaatacaca 14123756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 43072214 - 43072262
Alignment:
Q  345 tctcttactttttattttctacaacttaaacacatttaaaaaatacaca 393  Q
    ||||| ||||||||| ||||||| |||| |||||||| |||||||||||    
T  43072214 tctctaactttttatcttctacagcttacacacatttcaaaaatacaca 43072262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 4445410 - 4445362
Alignment:
Q  350 tactttttattttctacaacttaaacacatttaaaaaatacacaaaaat 398  Q
    |||||||||| |||||||||||| | |||||| ||||||||||| ||||    
T  4445410 tactttttatattctacaacttacaaacatttcaaaaatacacagaaat 4445362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 32056166 - 32056218
Alignment:
Q  333 tgtttatctctatctcttactttttattttctacaacttaaacacatttaaaa 385  Q
    |||||||||||||||  |||||||||| |||||||||||| || ||| |||||    
T  32056166 tgtttatctctatcttctactttttatcttctacaacttacactcatgtaaaa 32056218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 36394574 - 36394641
Alignment:
Q  333 tgtttatctctatctc--ttactttttattttctacaacttaaacaca-tttaaaaaatacacaaaaa 397  Q
    ||||||||||||||||  ||||||||||| |||||| ||| | ||||| ||||||||||| |||||||    
T  36394574 tgtttatctctatctctcttactttttatcttctaccactcacacacattttaaaaaatagacaaaaa 36394641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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