View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9463_low_21 (Length: 269)
Name: NF9463_low_21
Description: NF9463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9463_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 14221051 - 14221297
Alignment:
| Q |
16 |
catcactcttgcaaataacccaaatatatgcaaaccaaataacgttaaatctcttattcagaccctaccacatcctataagacctgcaaactggttatga |
115 |
Q |
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| T |
14221051 |
catcactgttgcaaataacccaaatatatgcgaaccaaataacgctaaatctcttattcagaccctaccacatcctataagacctgcaaactggttatga |
14221150 |
T |
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| Q |
116 |
tttatcaaggccacaataaaatctgcaaactggcgatgtgggactaaagacgagtgacatgtgaaacttttatcaccactcgccaaattcagttccaaaa |
215 |
Q |
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| T |
14221151 |
tttatcaaggccacaataaaatctgcaaactggcgatgtgggactaaagacgagtgacgtgtgaaacttttgtcaccactcgccaaattcagttccaaaa |
14221250 |
T |
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| Q |
216 |
tcattgttacacacatccaatgcacacattcgttctgtctctgctcc |
262 |
Q |
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| T |
14221251 |
tcattgttacacacatccaatgcacacattcgttctgtctcttctcc |
14221297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 14229378 - 14229471
Alignment:
| Q |
148 |
gcgatgtgggactaaagacgagtgacatgtgaaacttttatcaccactcgccaaattcagttccaaaatcattgttacacacatccaatgcaca |
241 |
Q |
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| T |
14229378 |
gcgatgtgggactaaatatgagtgacttgtgaaagtttagtcaccactcgccaaattgagttccaaaatcattgttacacacatccactgcaca |
14229471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 14226561 - 14226659
Alignment:
| Q |
146 |
tggcgatgtgggactaaagacgagtgacatgtgaaacttttatcaccactcgccaaattcagttccaaaatcattgttacacacatccaatgcacacat |
244 |
Q |
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| T |
14226561 |
tggcgatgtgggactaattatgagtgacttttgaaactttagtcaccactcgccaaattcagctcaaaaatcattgttatacacatccactgcacacat |
14226659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 14225854 - 14225933
Alignment:
| Q |
48 |
aaccaaataacgttaaatctct-tattcagaccctaccacatcctataagacctgcaaactggttatgatttatcaaggc |
126 |
Q |
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| T |
14225854 |
aaccaaataacactaaagctctctatttagaccctaccacagcctattagacccgcaaactggttaagatttatcaaggc |
14225933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 14223852 - 14223917
Alignment:
| Q |
151 |
atgtgggactaaagacgagtgacatgtgaaacttttatcaccactcgccaaattcagttccaaaat |
216 |
Q |
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| T |
14223852 |
atgtgggactaaatataagtgaattgtgaaactttagtcaccactcgccaaattcagtttcaaaat |
14223917 |
T |
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