View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9463_low_22 (Length: 258)

Name: NF9463_low_22
Description: NF9463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9463_low_22
NF9463_low_22
[»] chr7 (4 HSPs)
chr7 (1-157)||(1326741-1326898)
chr7 (169-248)||(1326937-1327016)
chr7 (1-159)||(12627588-12627744)
chr7 (3-157)||(38457653-38457808)
[»] chr1 (9 HSPs)
chr1 (1-159)||(43782597-43782755)
chr1 (1-159)||(45152844-45153002)
chr1 (2-155)||(3375795-3375948)
chr1 (3-74)||(40553413-40553484)
chr1 (3-157)||(48999996-49000149)
chr1 (188-246)||(3376008-3376066)
chr1 (190-235)||(48999891-48999936)
chr1 (188-248)||(40553625-40553685)
chr1 (188-244)||(43782811-43782867)
[»] scaffold0018 (2 HSPs)
scaffold0018 (8-155)||(180227-180375)
scaffold0018 (190-244)||(180437-180491)
[»] scaffold0190 (1 HSPs)
scaffold0190 (1-159)||(14189-14350)
[»] chr2 (3 HSPs)
chr2 (2-155)||(31116787-31116941)
chr2 (3-44)||(28035930-28035972)
chr2 (1-57)||(27333933-27333990)
[»] chr4 (6 HSPs)
chr4 (3-157)||(39465515-39465670)
chr4 (3-157)||(25147504-25147659)
chr4 (188-248)||(25147386-25147446)
chr4 (6-157)||(42705035-42705187)
chr4 (3-155)||(32305590-32305743)
chr4 (188-248)||(42705245-42705305)
[»] scaffold0251 (1 HSPs)
scaffold0251 (3-147)||(16875-17019)
[»] chr8 (3 HSPs)
chr8 (3-157)||(37227623-37227778)
chr8 (188-235)||(14096755-14096802)
chr8 (188-229)||(37227836-37227877)
[»] chr5 (8 HSPs)
chr5 (3-157)||(13274252-13274407)
chr5 (1-160)||(26653658-26653818)
chr5 (1-160)||(26925243-26925403)
chr5 (1-148)||(21101517-21101666)
chr5 (188-239)||(26653552-26653603)
chr5 (188-239)||(26925137-26925188)
chr5 (105-159)||(20943897-20943951)
chr5 (188-230)||(13274152-13274194)
[»] chr3 (8 HSPs)
chr3 (3-154)||(34437674-34437826)
chr3 (92-157)||(6777991-6778056)
chr3 (99-157)||(1596227-1596285)
chr3 (180-242)||(19199200-19199262)
chr3 (188-249)||(1596343-1596404)
chr3 (104-147)||(19199322-19199365)
chr3 (105-153)||(7633720-7633768)
chr3 (1-44)||(19199378-19199422)
[»] scaffold0007 (2 HSPs)
scaffold0007 (3-153)||(257161-257312)
scaffold0007 (188-241)||(257374-257427)
[»] scaffold0010 (1 HSPs)
scaffold0010 (188-247)||(32351-32410)
[»] chr6 (3 HSPs)
chr6 (3-146)||(35018075-35018219)
chr6 (188-235)||(35014365-35014412)
chr6 (3-44)||(6285658-6285698)
[»] scaffold0408 (1 HSPs)
scaffold0408 (188-235)||(7097-7144)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 1326741 - 1326898
Alignment:
Q  1 tgtagtcaggaatggccgcagggg-gttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccag 99  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  ||| ||||||      
T  1326741 tgtagtcaggaatggccacaggggggttcacaataggatgtgatattgtacagaaccatatcatgcacaccctagaatggcaccgcggctcgttatccga 1326840  T
Q  100 aaccagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggcc 157  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1326841 aaccagatcacccctctcctgttggctgaggacatgtagagcaaactccatgaaggcc 1326898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 1326937 - 1327016
Alignment:
Q  169 aggaagcatgtgaacaatttggacatacctgtactgcctaaaatcccgctctggcaagtgacagaccctcttgtctctgc 248  Q
    |||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  1326937 aggaggcatgtgaacaatttggacatacccatactgcctaaaatcccgttctggcaagtgacggaccctcttgtctctgc 1327016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 12627744 - 12627588
Alignment:
Q  1 tgtagtcaggaatggccgcagggggttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccaga 100  Q
    |||||| ||||| | | ||||||||||||||||||||||||||| | || |||||||  ||||| || ||||| |||||| |  | ||||  |||| |||    
T  12627744 tgtagttaggaacgacagcagggggttcacaataggatgtgatactctatagaaccaactcatgtaccccctataatggctcaacgactctctatctaga 12627645  T
Q  101 accagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggccat 159  Q
    ||||  ||||||||||  ||||||||||||||||| |||| ||||||||||||||||||    
T  12627644 acca--tcacccctctgttgttggctgaggacatgtagagaaaactccatgaaggccat 12627588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 38457808 - 38457653
Alignment:
Q  3 tagtcaggaatggccgca-gggggttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccagaa 101  Q
    ||||||||||||||| || |||||||||||||||||||||| | | ||  ||||||| ||||| || |||||| |||   || |||||  |||||| |||    
T  38457808 tagtcaggaatggccacatgggggttcacaataggatgtgaaactctaatgaaccatctcatgtaccccctagtatgagcccacaactggttatccggaa 38457709  T
Q  102 ccagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggcc 157  Q
    || ||| |||||| ||||| ||| |||||||||| |||||||||||| ||||||||    
T  38457708 ccggatgacccctatcctgatggttgaggacatgtagagcaaactccgtgaaggcc 38457653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 43782597 - 43782755
Alignment:
Q  1 tgtagtcaggaatggccgcagggggttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccaga 100  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||| | ||  ||||||| ||||| || ||||||||||   || ||||||||||||||||    
T  43782597 tgtagtctggaatggtcgcagggggttcacaataagatgtgatactctaacgaaccatctcatgtaccccctagaatgagcccacaactcattatccaga 43782696  T
Q  101 accagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggccat 159  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  43782697 accagatcacccctctcctgctggctgaggacatgtagagcaaactccatggaggccat 43782755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 45153002 - 45152844
Alignment:
Q  1 tgtagtcaggaatggccgcagggggttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||   |||||| ||||| || ||||| ||||   |  || ||| |||||| ||    
T  45153002 tgtagtcaggaatggccgcagggggttcacaataggatgtgatactctaacaaaccatctcatgtaccccctataatgagccaacagctcgttatccgga 45152903  T
Q  101 accagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggccat 159  Q
    |||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||||    
T  45152902 accagatcacccatctccagttggctgagaacatgtagagcaaactccatgaaggccat 45152844  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 155
Target Start/End: Original strand, 3375795 - 3375948
Alignment:
Q  2 gtagtcaggaatggccgcaggggg-ttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccaga 100  Q
    |||||||||||||||||||||||| |||||||||||||||| || | |||| |||||| ||||| ||  | ||||||| | || |  ||| | |||||||    
T  3375795 gtagtcaggaatggccgcaggggggttcacaataggatgtgctactctacataaccatctcatgtacctcttagaatgtctccacggctcgtcatccaga 3375894  T
Q  101 accagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaagg 155  Q
    || ||||||||| ||||||| |||||||||||||| |||| ||||||||||||||    
T  3375895 actagatcaccc-tctcctgctggctgaggacatgtagagaaaactccatgaagg 3375948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 40553413 - 40553484
Alignment:
Q  3 tagtcaggaatggccgcagggggttcacaataggatgtgatattgtacagaaccatatcatgcacgccctag 74  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||  ||||||| ||||| || ||||||    
T  40553413 tagtcaggaatggccgcagggggttcacaataggatgtgatactctaatgaaccatctcatgtaccccctag 40553484  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 49000149 - 48999996
Alignment:
Q  3 tagtcaggaatggccgcagggggttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccagaac 102  Q
    ||||||||||||||||||||||| |  || |||||| ||||| | ||  ||||||| ||||| || |||||| |||   || |  ||  |||||| |||     
T  49000149 tagtcaggaatggccgcaggggggtt-cagtaggatatgatactctaatgaaccatctcatgtaccccctagcatgagcccacggctggttatccggaat 49000051  T
Q  103 cagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggcc 157  Q
    | ||| |||||| ||||| |||||||||||||| |||||||||||| ||||||||    
T  49000050 cggatgacccctatcctgatggctgaggacatgtagagcaaactccgtgaaggcc 48999996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 3376008 - 3376066
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtgacagaccctcttgtctct 246  Q
    ||||||||| |||| ||||||| | |||||||||||||||||| |||| || |||||||    
T  3376008 tggacatacatgtattgcctaagaacccgctctggcaagtgacggaccatcctgtctct 3376066  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 48999936 - 48999891
Alignment:
Q  190 gacatacctgtactgcctaaaatcccgctctggcaagtgacagacc 235  Q
    |||||||| ||||||||||| | |||||||||||||||||| ||||    
T  48999936 gacatacccgtactgcctaagaacccgctctggcaagtgacggacc 48999891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 40553625 - 40553685
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtgacagaccctcttgtctctgc 248  Q
    |||||||||  ||||||||||| | |||||||||||||||||| |||| || |||| ||||    
T  40553625 tggacatactcgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgc 40553685  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 43782811 - 43782867
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtgacagaccctcttgtct 244  Q
    |||||||||  ||| ||||||| | | |||||||||||||||||||||||| |||||    
T  43782811 tggacatactcgtattgcctaagaactcgctctggcaagtgacagaccctcatgtct 43782867  T

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Target: scaffold0018 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 180227 - 180375
Alignment:
Q  8 aggaatggccgcagggggt-tcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccagaaccaga 106  Q
    ||||||||||| ||||||  || |||||||||||||||   |||| |||||| ||||  || |||||||||| | || |  ||| |||||||||||||||    
T  180227 aggaatggccgtagggggggtcgcaataggatgtgatacactacataaccatgtcatataccccctagaatgactccacgtctcgttatccagaaccaga 180326  T
Q  107 tcacccctctcctgttggctgaggacatgcagagcaaactccatgaagg 155  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  180327 tcacccctctcctgctggctgaggacatgtagagcaaactccatgaagg 180375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 180437 - 180491
Alignment:
Q  190 gacatacctgtactgcctaaaatcccgctctggcaagtgacagaccctcttgtct 244  Q
    |||||||| ||||||||||| | |||||||||||||||||||||||||| |||||    
T  180437 gacatacccgtactgcctaagaacccgctctggcaagtgacagaccctcctgtct 180491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 14189 - 14350
Alignment:
Q  1 tgtagtcaggaatggccgcagggg--gttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatcca 98  Q
    ||||||||||||||| || |||||  |||||||||||||||||||| | ||||||||||| ||||| || | |||||||||| || || ||| | |||||    
T  14189 tgtagtcaggaatggtcgtagggggggttcacaataggatgtgatactctacagaaccatctcatgtaccctctagaatggctccacagctcgtcatcca 14288  T
Q  99 gaaccagatcacccctctcctgttggctgaggacatgcagagc-aaactccatgaaggccat 159  Q
    ||| |||||||||||||| |||   |||||||||||| ||||| |||||||||||| |||||    
T  14289 gaatcagatcacccctcttctgcaagctgaggacatgtagagcaaaactccatgaaagccat 14350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 155
Target Start/End: Original strand, 31116787 - 31116941
Alignment:
Q  2 gtagtcaggaatggccgcaggggg-ttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccaga 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | ||  ||||||| ||||| || ||||||||||   || |  ||| |||||| ||    
T  31116787 gtagtcaggaatggccgcaggggggttcacaataggatgtgatactctaacgaaccatctcatgtaccccctagaatgagcccacggctcgttatccgga 31116886  T
Q  101 accagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaagg 155  Q
    ||  ||| |||||||| ||| |||||||||||||| ||||||||||| |||||||    
T  31116887 actggataacccctctgctgatggctgaggacatgtagagcaaactctatgaagg 31116941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 28035972 - 28035930
Alignment:
Q  3 tagtcaggaatggccgca-gggggttcacaataggatgtgata 44  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  28035972 tagtcaggaatggccgcatgggggttcacaataggatgtgata 28035930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27333990 - 27333933
Alignment:
Q  1 tgtagtcaggaatggccgcag-ggggttcacaataggatgtgatattgtacagaacca 57  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||   ||||||||||    
T  27333990 tgtagttaggaatggtcgcagaggggttcacaataggatgtgatacactacagaacca 27333933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 39465670 - 39465515
Alignment:
Q  3 tagtcaggaatggccgcaggggg-ttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccagaa 101  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||  ||| ||| ||||| || |||||| |||   || |  ||  |||||| |||    
T  39465670 tagtcaggaatggccgcaggggggttcacaataggatgtgatactctaatgaatcatctcatgtaccccctagtatgagcccacggctggttatccggaa 39465571  T
Q  102 ccagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggcc 157  Q
    || ||| |||||| ||||| |||||||||||||| |||||||||||||||||||||    
T  39465570 ccggatgacccctatcctgatggctgaggacatgtagagcaaactccatgaaggcc 39465515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 25147659 - 25147504
Alignment:
Q  3 tagtcaggaatggccgcaggggg-ttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccagaa 101  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||  |||| || ||||| ||  ||||| |||   || |  ||  |||||| |||    
T  25147659 tagtcaggaatggccgcaggggggttcacaataggatgtgatactctaatgaactatctcatgtaccacctagtatgagcccacggctggttatccggaa 25147560  T
Q  102 ccagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggcc 157  Q
    ||  || |||||| ||||| |||||||||||||| |||||||||| | ||||||||    
T  25147559 ccgtatgacccctatcctgatggctgaggacatgtagagcaaacttcgtgaaggcc 25147504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 25147446 - 25147386
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtgacagaccctcttgtctctgc 248  Q
    |||||||||| ||||||||||| | ||||||||||||||||||||||| || |||| ||||    
T  25147446 tggacatacccgtactgcctaagaacccgctctggcaagtgacagaccatcctgtcgctgc 25147386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 42705035 - 42705187
Alignment:
Q  6 tcaggaatggccgcaggggg-ttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccagaacca 104  Q
    |||||||||||||||||||| ||||||||||||||||||| | ||  ||||||| ||||  || |||||| |||   || || ||  ||||   |||       
T  42705035 tcaggaatggccgcaggggggttcacaataggatgtgatactctaatgaaccatctcatataccccctagtatgagcccacagctggttatttggaattt 42705134  T
Q  105 gatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggcc 157  Q
    ||| |||||||| ||| |||||||||||||| |||||||||||| ||||||||    
T  42705135 gatgacccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcc 42705187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 32305590 - 32305743
Alignment:
Q  3 tagtcaggaatggccgca-gggggttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccagaa 101  Q
    ||||||||||||||| || |||||||||||||||||||||||| | ||  ||||||| ||||| || ||| || |||   || |  ||  |||||  |||    
T  32305590 tagtcaggaatggccacatgggggttcacaataggatgtgatactctaatgaaccatctcatgtaccccccagtatgagcccacggctggttatctggaa 32305689  T
Q  102 ccagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaagg 155  Q
    |  ||| |||||| ||||| || ||||||||||| |||||||||||| ||||||    
T  32305690 ctggatgacccctatcctgatgactgaggacatgtagagcaaactccgtgaagg 32305743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 42705245 - 42705305
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtgacagaccctcttgtctctgc 248  Q
    ||||||| || ||||||||||| | |||||||||||||||||| |||| || |||| ||||    
T  42705245 tggacatgcccgtactgcctaagaacccgctctggcaagtgacggaccttcatgtcgctgc 42705305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 16875 - 17019
Alignment:
Q  3 tagtcaggaatggccgcaggggg-ttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccagaa 101  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||  ||||||| ||||| || |||||| |||   || || ||  |||||| |||    
T  16875 tagtcaggaatggccgcaggggggttcacaataggatgtgatactctaatgaaccatctcatgtac-ccctagtatgagcccacagctggttatccggaa 16973  T
Q  102 ccagatcacccctctcctgttggctgaggacatgcagagcaaactc 147  Q
    || |||||||||||| ||| |||||||||||||| |||||||||||    
T  16974 ccggatcacccctctactgatggctgaggacatgtagagcaaactc 17019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 157
Target Start/End: Original strand, 37227623 - 37227778
Alignment:
Q  3 tagtcaggaatggccgcagggg-gttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccagaa 101  Q
    |||||||||||||||||||||| |||||||||||||||||||| | ||  ||||||| |||||||| || ||| |||   || | |||  |||||| |||    
T  37227623 tagtcaggaatggccgcaggggggttcacaataggatgtgatactctaatgaaccatctcatgcaccccttagtatgagcccacgactggttatcccgaa 37227722  T
Q  102 ccagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggcc 157  Q
    |  ||| |||||| || || |||||||||||||| |||||||||||| ||||||||    
T  37227723 ctggatgacccctatcttgatggctgaggacatgtagagcaaactccgtgaaggcc 37227778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 14096802 - 14096755
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtgacagacc 235  Q
    |||||||||||||||||||||| |  ||||||||||||||||| ||||    
T  14096802 tggacatacctgtactgcctaagaaaccgctctggcaagtgacggacc 14096755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 37227836 - 37227877
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtga 229  Q
    |||||||||| ||||||||||| | |||||||||||||||||    
T  37227836 tggacatacccgtactgcctaagaacccgctctggcaagtga 37227877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 13274407 - 13274252
Alignment:
Q  3 tagtcaggaatggccgcaggggg-ttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccagaa 101  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| | ||  ||||||| ||||| || |||||| |||   || | |||  |||||| |||    
T  13274407 tagtcaggaatagccgcaggggggttcacaataggatgtgatactctaatgaaccatctcatgtaccccctagtatgtgcccacgactggttatccggaa 13274308  T
Q  102 ccagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggcc 157  Q
    || ||| |||||| ||||| |||||||||||||| |||| ||||||  ||||||||    
T  13274307 ccggatgacccctatcctgatggctgaggacatgtagagaaaactctgtgaaggcc 13274252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 26653818 - 26653658
Alignment:
Q  1 tgtagtcaggaatggccgcaggggg-ttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccag 99  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||| | ||  ||||||| ||||| || || |||||   | || | |||| || ||  |    
T  26653818 tgtagtcaggaatggctacaggggggttcacaataggatgtgatactctaacgaaccatctcatgtaccccttagaagcactccacgactcgttgtctgg 26653719  T
Q  100 aaccagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggccatt 160  Q
    || || ||||||||||||||| ||| |||||||||| |||||||||||||| |||| ||||    
T  26653718 aatcaaatcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcatt 26653658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 26925403 - 26925243
Alignment:
Q  1 tgtagtcaggaatggccgcaggggg-ttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccag 99  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||| | ||  ||||||| ||||| || || |||||   | || | |||| || ||  |    
T  26925403 tgtagtcaggaatggctacaggggggttcacaataggatgtgatactctaacgaaccatctcatgtaccccttagaagcactccacgactcgttgtctgg 26925304  T
Q  100 aaccagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggccatt 160  Q
    || || ||||||||||||||| ||| |||||||||| |||||||||||||| |||| ||||    
T  26925303 aatcaaatcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcatt 26925243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 21101666 - 21101517
Alignment:
Q  1 tgtagtcaggaatggccgca--gggggttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatcca 98  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||| | ||  ||||||| ||||| || || ||| |||   || | |||  ||||||     
T  21101666 tgtagtcaggaatggccgcaaggggggttcacaataggatgcgatactctaatgaaccatctcatgtaccccttagtatgagcccacgactggttatccc 21101567  T
Q  99 gaaccagatcacccctctcctgttggctgaggacatgcagagcaaactcc 148  Q
    ||||||||| ||||||||  |  |||||||||||||| ||||||||||||    
T  21101566 gaaccagatgacccctctgttaatggctgaggacatgtagagcaaactcc 21101517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 26653603 - 26653552
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtgacagaccctct 239  Q
    |||||||||| ||||||||||| | |||| ||||||||||||||||||||||    
T  26653603 tggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctct 26653552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 26925188 - 26925137
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtgacagaccctct 239  Q
    |||||||||| ||||||||||| | |||| ||||||||||||||||||||||    
T  26925188 tggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctct 26925137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 20943951 - 20943897
Alignment:
Q  105 gatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggccat 159  Q
    |||||||||||||||| ||||| |||||||| | || ||||||||||||||||||    
T  20943951 gatcacccctctcctgctggctaaggacatggacagaaaactccatgaaggccat 20943897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 13274194 - 13274152
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtgac 230  Q
    |||||||||| ||||||||||| | ||||||||||||||||||    
T  13274194 tggacatacccgtactgcctaagaacccgctctggcaagtgac 13274152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 154
Target Start/End: Original strand, 34437674 - 34437826
Alignment:
Q  3 tagtcaggaatggccgcaggg-ggttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccagaa 101  Q
    ||||||||||||| ||||||| ||||||||||||||||||||| | ||  ||| ||| ||||| || |||||| |||   || ||  |  |||||| |||    
T  34437674 tagtcaggaatgggcgcagggaggttcacaataggatgtgatactctaatgaatcatctcatgtaccccctagtatgagaccacagatggttatccggaa 34437773  T
Q  102 ccagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaag 154  Q
    || ||| |||||| ||||| |||||||||||||| |||||||||||| |||||    
T  34437774 ccggatgacccctatcctgatggctgaggacatgtagagcaaactccgtgaag 34437826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 6778056 - 6777991
Alignment:
Q  92 ttatccagaaccagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggcc 157  Q
    |||||| ||||  |||||||||||| ||| |||||||||||||| |||||||||||| ||||||||    
T  6778056 ttatccggaactggatcacccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcc 6777991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 1596227 - 1596285
Alignment:
Q  99 gaaccagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaaggcc 157  Q
    ||||| ||| |||||||| ||| ||| |||||||||| |||||||||||||||||||||    
T  1596227 gaaccggatgacccctctgctgatgggtgaggacatgtagagcaaactccatgaaggcc 1596285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 19199262 - 19199200
Alignment:
Q  180 gaacaatttggacatacctgtactgcctaaaatcccgctctggcaagtgacagaccctcttgt 242  Q
    ||||| |||||||||||  ||||||||||| | ||| ||||||||||||||| ||||||||||    
T  19199262 gaacagtttggacatactagtactgcctaagaacccactctggcaagtgacataccctcttgt 19199200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 1596343 - 1596404
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtgacagaccctcttgtctctgct 249  Q
    |||||||||||||||||||||| | |||||| ||||||||||| |||| || |||| |||||    
T  1596343 tggacatacctgtactgcctaagaacccgctttggcaagtgacggaccatcctgtcgctgct 1596404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 19199365 - 19199322
Alignment:
Q  104 agatcacccctctcctgttggctgaggacatgcagagcaaactc 147  Q
    ||||||||||||||||  |||||||||||||| |||||||||||    
T  19199365 agatcacccctctcctactggctgaggacatgtagagcaaactc 19199322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 7633768 - 7633720
Alignment:
Q  105 gatcacccctctcctgttggctgaggacatgcagagcaaactccatgaa 153  Q
    |||||||||||||||| ||||| |||||||| | | |||||||||||||    
T  7633768 gatcacccctctcctgctggctaaggacatggacaacaaactccatgaa 7633720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19199422 - 19199378
Alignment:
Q  1 tgtagtcaggaatggccgca-gggggttcacaataggatgtgata 44  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||    
T  19199422 tgtagtcaggaatggacgcaggggggttcataataggatgtgata 19199378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 257161 - 257312
Alignment:
Q  3 tagtcaggaatggccgcagggg-gttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccagaa 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||   ||  ||||||| ||||| || |||||| |||   || | |||  |||||| |||    
T  257161 tagtcaggaatggccgcaggggggttcacaataggatgtgatacactaatgaaccatctcatgtaccccctagtatgagtccacgactggttatccggaa 257260  T
Q  102 ccagatcacccctctcctgttggctgaggacatgcagagcaaactccatgaa 153  Q
    || ||| |||||  ||||| ||| |||||||||| |||||||||||| ||||    
T  257261 ccggatgaccccaatcctgatggttgaggacatgtagagcaaactccgtgaa 257312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 257374 - 257427
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtgacagaccctcttg 241  Q
    |||||||||| ||||| ||||| | |||||||||||||||||| |||| |||||    
T  257374 tggacatacccgtactacctaagaacccgctctggcaagtgacggaccatcttg 257427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 32351 - 32410
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtgacagaccctcttgtctctg 247  Q
    |||||||||||||||| ||||| | |||||||||||||||||| |||| || ||||||||    
T  32351 tggacatacctgtactacctaagaacccgctctggcaagtgacggaccatcatgtctctg 32410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 35018219 - 35018075
Alignment:
Q  3 tagtcaggaatggccgcaggggg-ttcacaataggatgtgatattgtacagaaccatatcatgcacgccctagaatggcgccgcaactcattatccagaa 101  Q
    |||||||||||||||| |||||| ||||||||||||| ||||| | ||  ||||||| ||||| || |||||| |||   |  |||||  |||||| |||    
T  35018219 tagtcaggaatggccgtaggggggttcacaataggatatgatactctaatgaaccatctcatgtaccccctagtatgagcctacaactggttatccggaa 35018120  T
Q  102 ccagatcacccctctcctgttggctgaggacatgcagagcaaact 146  Q
    |  ||| |||||| ||||| | | |||||||||| ||||||||||    
T  35018119 ctggatgacccctatcctgatagttgaggacatgtagagcaaact 35018075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 35014412 - 35014365
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtgacagacc 235  Q
    |||||||||| ||||||||||| | |||||||||||||||||| ||||    
T  35014412 tggacatacccgtactgcctaagaacccgctctggcaagtgacggacc 35014365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 6285658 - 6285698
Alignment:
Q  3 tagtcaggaatggccgcagggggttcacaataggatgtgata 44  Q
    |||||||||||||  |||||||||||||||||||||||||||    
T  6285658 tagtcaggaatgga-gcagggggttcacaataggatgtgata 6285698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 7144 - 7097
Alignment:
Q  188 tggacatacctgtactgcctaaaatcccgctctggcaagtgacagacc 235  Q
    |||||||||||||||||||||| |  ||||||||||||||||| ||||    
T  7144 tggacatacctgtactgcctaagaaaccgctctggcaagtgacggacc 7097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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