View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9463_low_26 (Length: 242)
Name: NF9463_low_26
Description: NF9463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9463_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 42082254 - 42082030
Alignment:
| Q |
1 |
ttcctcgcaattatttgacaagagcatttcaactaccaaaacctgtagttttcacattaatcaaccgcatgcttacagttccatctactatggcaaaggt |
100 |
Q |
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| T |
42082254 |
ttcctcgcaattatttgacaagagcatttcaactaccaaaacctgtagttttcacattaatcaaccgcatgcttacagttccatctactatggcaaaggt |
42082155 |
T |
|
| Q |
101 |
aggccctgcaggcttggcccatcttctggagaacataactttatcgtattctgctgtcatactcaggctctatgcaccttccttcggtcttctgatccaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42082154 |
aggccctgcaggcttggcccatcttctggagaacataacttaatcgtattctgctgtcatactcaggctctatgcaccttccttcgggcttctgatccaa |
42082055 |
T |
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| Q |
201 |
tcttttgtacactactagtactact |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
42082054 |
tcttttgtacactactagtactact |
42082030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 42079649 - 42079481
Alignment:
| Q |
1 |
ttcctcgcaattatttgacaagagcatttcaactaccaaaacctgtagttttcacattaatcaaccgcatgcttacagttccatctactatggcaaaggt |
100 |
Q |
| |
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|||||| |||| || ||| | ||||||| || ||||||||| || ||||| ||||||||| || |||||| ||||||||||||||||| | |||||||| |
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| T |
42079649 |
ttcctcacaatcatctgaaaggagcattccagctaccaaaatctatagttatcacattaagcatgcgcatggttacagttccatctacttttgcaaaggt |
42079550 |
T |
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| Q |
101 |
aggccctgcaggcttggcccatcttctggagaacataactttatcgtattctgctgtcatactcaggct |
169 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |
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| T |
42079549 |
aggccatgcaggcttggcccatcttctggagaatataactttatcctattctgctgtcatattcaggct |
42079481 |
T |
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